Search of human proteins with 4759234

Search of human proteins with 4759234

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4759234 TBP-like 1 [Homo sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4759234 TBP-like 1 [Homo sapiens]                                  369   e-102
gi|4507379 TATA box binding protein [Homo sapiens]                    137   5e-33
gi|39930602 TATA box binding protein like 2 [Homo sapiens]            135   2e-32
gi|154937342 ring finger protein 190 [Homo sapiens]                    27   7.8  
gi|154937340 ring finger protein 190 [Homo sapiens]                    27   7.8  

>gi|4759234 TBP-like 1 [Homo sapiens]
          Length = 186

 Score =  369 bits (946), Expect = e-102
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI 60
           MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
Sbjct: 1   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI 60

Query: 61  WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF 120
           WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
Sbjct: 61  WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF 120

Query: 121 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE 180
           TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
Sbjct: 121 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE 180

Query: 181 SRKEIL 186
           SRKEIL
Sbjct: 181 SRKEIL 186


>gi|4507379 TATA box binding protein [Homo sapiens]
          Length = 339

 Score =  137 bits (345), Expect = 5e-33
 Identities = 73/173 (42%), Positives = 106/173 (61%), Gaps = 2/173 (1%)

Query: 13  ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
           + N+V      C L+L+ IAL   N  Y  +    V+M++R+PR TA I+SSGK++CTGA
Sbjct: 165 LQNIVSTVNLGCKLDLKTIALRARNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 224

Query: 72  TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
            SEE+++  AR+ AR +QKLGF   F DFK+ N++  C++ F IRL      ++  +SYE
Sbjct: 225 KSEEQSRLAARKYARVVQKLGFPAKFLDFKIQNMVGSCDVKFPIRLEGLVLTHQQFSSYE 284

Query: 132 PELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKA-VATAVEQIYPFVFESRK 183
           PEL P + YR+   R  L IF +G + +TG  V+A +  A E IYP +   RK
Sbjct: 285 PELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRK 337


>gi|39930602 TATA box binding protein like 2 [Homo sapiens]
          Length = 375

 Score =  135 bits (340), Expect = 2e-32
 Identities = 70/168 (41%), Positives = 104/168 (61%), Gaps = 2/168 (1%)

Query: 13  ITNVVCVFRTRCHLNLRKIALEGANVIYK-RDVGKVLMKLRKPRITATIWSSGKIICTGA 71
           + N+V      C L+L+KIAL   N  Y  +    V+M++R+PR TA I+SSGK++CTGA
Sbjct: 202 LQNIVSTVNLACKLDLKKIALHAKNAEYNPKRFAAVIMRIREPRTTALIFSSGKMVCTGA 261

Query: 72  TSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEFTKNNRPHASYE 131
            SEE+++  AR+ AR +QKLGF   F DFK+ N++  C++ F IRL      ++  +SYE
Sbjct: 262 KSEEQSRLAARKYARVVQKLGFPARFLDFKIQNMVGSCDVRFPIRLEGLVLTHQQFSSYE 321

Query: 132 PELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKA-VATAVEQIYPFV 178
           PEL P + YR+   R  L IF +G + +TG   ++ +  A E IYP +
Sbjct: 322 PELFPGLIYRMVKPRIVLLIFVSGKVVLTGAKERSEIYEAFENIYPIL 369


>gi|154937342 ring finger protein 190 [Homo sapiens]
          Length = 808

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 106 LAVCNMPFEIRLPEFTKNNRPHASYEPELHPAV--CYRIKSLRATLQIFSTGSITVT--- 160
           L   + P     P+  K   P A  + ELHPA+   ++ K+    L  FS   +T T   
Sbjct: 203 LVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVG 262

Query: 161 GPNVKAVATAVEQIYPFV-FESRKE 184
           GP   +     E  Y  +   SR+E
Sbjct: 263 GPRKASFRFRDEDFYSILSLNSRRE 287


>gi|154937340 ring finger protein 190 [Homo sapiens]
          Length = 808

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 106 LAVCNMPFEIRLPEFTKNNRPHASYEPELHPAV--CYRIKSLRATLQIFSTGSITVT--- 160
           L   + P     P+  K   P A  + ELHPA+   ++ K+    L  FS   +T T   
Sbjct: 203 LVPSSQPMTENAPDRAKKGDPSAPSQSELHPALSQAFQGKNSPQVLSEFSGPPLTPTTVG 262

Query: 161 GPNVKAVATAVEQIYPFV-FESRKE 184
           GP   +     E  Y  +   SR+E
Sbjct: 263 GPRKASFRFRDEDFYSILSLNSRRE 287


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,200,228
Number of Sequences: 37866
Number of extensions: 233874
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 5
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.