Search of human proteins with 4758922

Search of human proteins with 4758922

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4758922 phosphatidylinositol glycan anchor biosynthesis,
class L [Homo sapiens]
         (252 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4758922 phosphatidylinositol glycan anchor biosynthesis, clas...   509   e-145
gi|18375650 protein tyrosine phosphatase, non-receptor type 13 i...    33   0.31 
gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]            32   0.40 
gi|118572606 hemicentin 1 [Homo sapiens]                               30   2.6  
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ...    28   5.8  
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ...    28   5.8  
gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo ...    28   5.8  
gi|39780571 misato [Homo sapiens]                                      28   7.6  

>gi|4758922 phosphatidylinositol glycan anchor biosynthesis, class L
           [Homo sapiens]
          Length = 252

 Score =  509 bits (1312), Expect = e-145
 Identities = 252/252 (100%), Positives = 252/252 (100%)

Query: 1   MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60
           MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT
Sbjct: 1   MEAMWLLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLVIAHPDDEAMFFAPT 60

Query: 61  VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120
           VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM
Sbjct: 61  VLGLARLRHWVYLLCFSAGNYYNQGETRKKELLQSCDVLGIPLSSVMIIDNRDFPDDPGM 120

Query: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180
           QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL
Sbjct: 121 QWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKLPKGCSVL 180

Query: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240
           TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF
Sbjct: 181 TLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEVAQAKKAMSCHRSQLLWFRRLYIIF 240

Query: 241 SRYMRINSLSFL 252
           SRYMRINSLSFL
Sbjct: 241 SRYMRINSLSFL 252


>gi|18375650 protein tyrosine phosphatase, non-receptor type 13
            isoform 4 [Homo sapiens]
          Length = 2490

 Score = 32.7 bits (73), Expect = 0.31
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 115  PDDPGMQWDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAV----RALHSE 170
            P  PG  ++ E     L ++    GI++ V FD GGV+    H  +Y        A  S+
Sbjct: 1360 PPKPGDIFEVE-----LAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESD 1414

Query: 171  GKLPKGCSVLTLQSVNV 187
            G++ KG  VL +  V++
Sbjct: 1415 GRIHKGDRVLAVNGVSL 1431


>gi|51948366 ribonucleoprotein, PTB-binding 2 [Homo sapiens]
          Length = 678

 Score = 32.3 bits (72), Expect = 0.40
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 137 VNGINLVVTFDAGGVSGHSNHIALYAAVRALHS--EGKLPKGCSVLTLQSVN 186
           + G  + V+F A G  G S   AL AA R +HS  +G LP+   V  ++S+N
Sbjct: 297 IKGSKVQVSFCAPGAPGRSTLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLN 348


>gi|118572606 hemicentin 1 [Homo sapiens]
          Length = 5635

 Score = 29.6 bits (65), Expect = 2.6
 Identities = 42/194 (21%), Positives = 79/194 (40%), Gaps = 15/194 (7%)

Query: 6    LLCVALAVLAWGFLWVWDSSERMKSREQGGRLGAESRTLLV-IAHPDDEAMF--FAPTVL 62
            LLC +  +     +W    S  +       R+ +  R L + IA   D A++   A  V 
Sbjct: 2216 LLCESSGIPPPNLIWKKKGSPVLTDSMGRVRILSGGRQLQISIAEKSDAALYSCVASNVA 2275

Query: 63   GLARLRHWVYLLCFSAGNYYNQGE-------TRKKELLQSCDVLGIPLSSV-MIIDNRDF 114
            G A+  +   L  +      N G        TR K +   C+V GIP  +V  + D    
Sbjct: 2276 GTAKKEY--NLQVYIRPTITNSGSHPTEIIVTRGKSISLECEVQGIPPPTVTWMKDGHPL 2333

Query: 115  PDDPGMQ-WDTEHVARVLLQHIEVNGINLVVTFDAGGVSGHSNHIALYAAVRALHSEGKL 173
                G++  D  H+ ++   H+   G  + V  +  G++     ++++A    + +  + 
Sbjct: 2334 IKAKGVEILDEGHILQLKNIHVSDTGRYVCVAVNVAGMTDKKYDLSVHAPPSIIGNH-RS 2392

Query: 174  PKGCSVLTLQSVNV 187
            P+  SV+   SV++
Sbjct: 2393 PENISVVEKNSVSL 2406


>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
           sapiens]
          Length = 582

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 113 DFPDDPGMQ-WDTEHVARVLLQHIEVNGI-NLVVTFDAGGVSGHSNHIALYAAVRA---- 166
           D  DD G   W+T+ V   + + +EV GI  ++V    GG+   ++H+ +  A R     
Sbjct: 479 DCKDDQGQDVWNTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVP 538

Query: 167 -------LHSEGKLPKGCSVLTL 182
                  L  +GK+  G   L+L
Sbjct: 539 PAQGLWFLKPQGKMQGGNDRLSL 561


>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
           sapiens]
          Length = 589

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 113 DFPDDPGMQ-WDTEHVARVLLQHIEVNGI-NLVVTFDAGGVSGHSNHIALYAAVRA---- 166
           D  DD G   W+T+ V   + + +EV GI  ++V    GG+   ++H+ +  A R     
Sbjct: 486 DCKDDQGQDVWNTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVP 545

Query: 167 -------LHSEGKLPKGCSVLTL 182
                  L  +GK+  G   L+L
Sbjct: 546 PAQGLWFLKPQGKMQGGNDRLSL 568


>gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo
           sapiens]
          Length = 221

 Score = 28.5 bits (62), Expect = 5.8
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 13/83 (15%)

Query: 113 DFPDDPGMQ-WDTEHVARVLLQHIEVNGI-NLVVTFDAGGVSGHSNHIALYAAVRA---- 166
           D  DD G   W+T+ V   + + +EV GI  ++V    GG+   ++H+ +  A R     
Sbjct: 118 DCKDDQGQDVWNTQRVRSFIHRGVEVQGILVIIVPIIRGGIIEGTHHVLVSWAPRGSKVP 177

Query: 167 -------LHSEGKLPKGCSVLTL 182
                  L  +GK+  G   L+L
Sbjct: 178 PAQGLWFLKPQGKMQGGNDRLSL 200


>gi|39780571 misato [Homo sapiens]
          Length = 570

 Score = 28.1 bits (61), Expect = 7.6
 Identities = 14/50 (28%), Positives = 24/50 (48%)

Query: 167 LHSEGKLPKGCSVLTLQSVNVLRKYISLLDLPLSLLHTQDVLFVLNSKEV 216
           LH +  LP  CS +   +++ +     L   P+S++H  D+L     K V
Sbjct: 319 LHYDATLPFHCSAILATALDTVTVPYRLCSSPVSMVHLADMLSFCGKKVV 368


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,099,164
Number of Sequences: 37866
Number of extensions: 363108
Number of successful extensions: 988
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 984
Number of HSP's gapped (non-prelim): 11
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.