Guide to the Human Genome
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Name: NCR1 Sequence: fasta or formatted (287aa) NCBI GI: 224586788
Description:

natural cytotoxicity triggering receptor 1 isoform c

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt prot [303aa] natural cytotoxicity triggering receptor 1 isoform b
alt prot [304aa] natural cytotoxicity triggering receptor 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         17           1
 C cysteine            2.4          7           2
 D aspartate           3.5         10           1
 E glutamate           6.3         18           1
 F phenylalanine       4.5         13           1
 G glycine             5.9         17           1
 H histidine           2.8          8           1
 I isoleucine          2.8          8           1
 K lysine              3.8         11           1
 L leucine            11.1         32           3
 M methionine          2.4          7           1
 N asparagine          3.1          9           2
 P proline             7.0         20           2
 Q glutamine           4.2         12           3
 R arginine            6.6         19           3
 S serine              7.3         21           2
 T threonine           7.0         20           2
 V valine              7.3         21           2
 W tryptophan          2.4          7           1
 Y tyrosine            3.5         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   natural cytotoxicity triggering receptor 1 isoform ... 
NCR1                  0.983   natural cytotoxicity triggering receptor 1 isoform ...
NCR1                  0.981   natural cytotoxicity triggering receptor 1 isoform a ...
LILRB4                0.276   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB4                0.276   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA5                0.273   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA5                0.250   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA6                0.248   leukocyte immunoglobulin-like receptor, subfamily A...
GP6                   0.248   glycoprotein VI (platelet) isoform 2 
LILRB3                0.247   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB3                0.247   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA4                0.243   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB5                0.240   leukocyte immunoglobulin-like receptor, subfamily B...
GP6                   0.231   glycoprotein VI (platelet) isoform 1 
LILRA5                0.226   leukocyte immunoglobulin-like receptor subfamily A m...
LILRB5                0.217   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB5                0.217   leukocyte immunoglobulin-like receptor, subfamily B, ...
LILRA1                0.213   leukocyte immunoglobulin-like receptor, subfamily A (...
LILRB2                0.210   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB2                0.210   leukocyte immunoglobulin-like receptor, subfamily B...
FCAR                  0.208   Fc alpha receptor isoform a precursor 
LILRA5                0.201   leukocyte immunoglobulin-like receptor subfamily A m...
LILRA3                0.201   leukocyte immunoglobulin-like receptor, subfamily A ...
LOC100293904          0.189   PREDICTED: similar to leucocyte immunoglobulin-like...
LILRB1                0.189   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.189   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.189   leukocyte immunoglobulin-like receptor, subfamily B...
LILRB1                0.189   leukocyte immunoglobulin-like receptor, subfamily B...
LILRA2                0.189   leukocyte immunoglobulin-like receptor, subfamily A...
LILRA2                0.189   leukocyte immunoglobulin-like receptor, subfamily A (...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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