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Search of human proteins with 47419918
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47419918 tryptophanyl-tRNA synthetase isoform b [Homo
sapiens]
(430 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47419920 tryptophanyl-tRNA synthetase isoform b [Homo sapiens] 879 0.0
gi|47419918 tryptophanyl-tRNA synthetase isoform b [Homo sapiens] 879 0.0
gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens] 879 0.0
gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens] 879 0.0
gi|239750058 PREDICTED: similar to hCG40922 [Homo sapiens] 217 2e-56
gi|239755558 PREDICTED: similar to hCG40922 [Homo sapiens] 214 9e-56
gi|4507947 tyrosyl-tRNA synthetase [Homo sapiens] 39 0.009
gi|5454102 transforming, acidic coiled-coil containing protein 3... 32 0.85
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens] 30 4.2
gi|4557563 excision repair cross-complementing rodent repair def... 29 9.4
>gi|47419920 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]
Length = 430
Score = 879 bits (2271), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD
Sbjct: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
Query: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG
Sbjct: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
Query: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD
Sbjct: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
Query: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP
Sbjct: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
Query: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP
Sbjct: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
Query: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM
Sbjct: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
Query: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 420
YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM
Sbjct: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 420
Query: 421 TPRKLSFDFQ 430
TPRKLSFDFQ
Sbjct: 421 TPRKLSFDFQ 430
>gi|47419918 tryptophanyl-tRNA synthetase isoform b [Homo sapiens]
Length = 430
Score = 879 bits (2271), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD
Sbjct: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
Query: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG
Sbjct: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
Query: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD
Sbjct: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
Query: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP
Sbjct: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
Query: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP
Sbjct: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
Query: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM
Sbjct: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
Query: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 420
YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM
Sbjct: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 420
Query: 421 TPRKLSFDFQ 430
TPRKLSFDFQ
Sbjct: 421 TPRKLSFDFQ 430
>gi|47419916 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
Length = 471
Score = 879 bits (2271), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD
Sbjct: 42 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 101
Query: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG
Sbjct: 102 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 161
Query: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD
Sbjct: 162 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 221
Query: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP
Sbjct: 222 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 281
Query: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP
Sbjct: 282 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 341
Query: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM
Sbjct: 342 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 401
Query: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 420
YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM
Sbjct: 402 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 461
Query: 421 TPRKLSFDFQ 430
TPRKLSFDFQ
Sbjct: 462 TPRKLSFDFQ 471
>gi|47419914 tryptophanyl-tRNA synthetase isoform a [Homo sapiens]
Length = 471
Score = 879 bits (2271), Expect = 0.0
Identities = 430/430 (100%), Positives = 430/430 (100%)
Query: 1 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 60
MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD
Sbjct: 42 MLVSLKMSYKAAAGEDYKADCPPGNPAPTSNHGPDATEAEEDFVDPWTVQTSSAKGIDYD 101
Query: 61 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 120
KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG
Sbjct: 102 KLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFYLYTG 161
Query: 121 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 180
RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD
Sbjct: 162 RGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAVENAKD 221
Query: 181 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 240
IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP
Sbjct: 222 IIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFP 281
Query: 241 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 300
AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP
Sbjct: 282 AIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHSTFFP 341
Query: 301 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 360
ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM
Sbjct: 342 ALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFM 401
Query: 361 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 420
YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM
Sbjct: 402 YLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEIVKEFM 461
Query: 421 TPRKLSFDFQ 430
TPRKLSFDFQ
Sbjct: 462 TPRKLSFDFQ 471
>gi|239750058 PREDICTED: similar to hCG40922 [Homo sapiens]
Length = 144
Score = 217 bits (552), Expect = 2e-56
Identities = 110/142 (77%), Positives = 123/142 (86%), Gaps = 1/142 (0%)
Query: 278 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 337
MTRD+APRIGYPKP LLHS+FF LQG Q KMSASDP+S IFLT+ A QIKTK++KHAFS
Sbjct: 1 MTRDIAPRIGYPKPVLLHSSFFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
Query: 338 GGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 397
G RDTIEEHR FGGNC VDVSFMYLT FL+D+DKLEQ+RKD TS MLTG+LKK LIEVL
Sbjct: 61 GERDTIEEHRHFGGNCVVDVSFMYLT-FLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVL 119
Query: 398 QPLIAEHQARRKEVTDEIVKEF 419
QP+I EHQA+ KEV DE+VKEF
Sbjct: 120 QPVITEHQAQCKEVMDELVKEF 141
>gi|239755558 PREDICTED: similar to hCG40922 [Homo sapiens]
Length = 144
Score = 214 bits (546), Expect = 9e-56
Identities = 109/142 (76%), Positives = 122/142 (85%), Gaps = 1/142 (0%)
Query: 278 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 337
MTRD+APRIGYPKP LLHS+ F LQG Q KMSASDP+S IFLT+ A QIKTK++KHAFS
Sbjct: 1 MTRDIAPRIGYPKPVLLHSSLFSDLQGIQNKMSASDPSSFIFLTNMAMQIKTKISKHAFS 60
Query: 338 GGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVL 397
G RDTIEEHR FGGNC VDVSFMYLT FL+D+DKLEQ+RKD TS MLTG+LKK LIEVL
Sbjct: 61 GERDTIEEHRHFGGNCVVDVSFMYLT-FLKDEDKLEQMRKDDTSRDMLTGDLKKMLIEVL 119
Query: 398 QPLIAEHQARRKEVTDEIVKEF 419
QP+I EHQA+ KEV DE+VKEF
Sbjct: 120 QPVITEHQAQCKEVMDELVKEF 141
>gi|4507947 tyrosyl-tRNA synthetase [Homo sapiens]
Length = 528
Score = 38.9 bits (89), Expect = 0.009
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 270 IDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKT 329
IDQ F P +GY K L + P L G +KMS+S+ S I L D + +K
Sbjct: 186 IDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEESKIDLLDRKEDVKK 243
Query: 330 KVNK 333
K+ K
Sbjct: 244 KLKK 247
>gi|5454102 transforming, acidic coiled-coil containing protein 3
[Homo sapiens]
Length = 838
Score = 32.3 bits (72), Expect = 0.85
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 12 AAGEDYKADCPPGNPAPTSNHGPDATE-AEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSK 70
+A CP P PT G A E EE F DP V + A+ +DY + +FG+S
Sbjct: 493 SASTSLPTSCPGSEPVPTHQQGQPALELKEESFRDPAEVLGTGAE-VDY---LEQFGTSS 548
Query: 71 IDKELINR 78
+ + +
Sbjct: 549 FKESALRK 556
>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
Length = 1374
Score = 30.0 bits (66), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 9 YKAAAGEDYKADCPPGNPAPTSNHGPD 35
++ A G++Y AD G+PA + +GPD
Sbjct: 65 FENAEGDEYAADLAQGSPATAAQNGPD 91
>gi|4557563 excision repair cross-complementing rodent repair
deficiency, complementation group 3 [Homo sapiens]
Length = 782
Score = 28.9 bits (63), Expect = 9.4
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Query: 306 QTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFF 365
+ ++ S+ ++ +T+T K+ ++K A S G + G D+ M L F
Sbjct: 196 ECRLRNSEGEATELITETFTS-KSAISKTAESSGGPSTSRVTDPQGKSDIP---MDLFDF 251
Query: 366 LEDDDKLEQIRKDYTSGAM-----LTGELKKALIEVLQPLIAEHQARRKEVTDEI 415
E DK E+ ++ + + + EL+K I + PL+AE+ R V +I
Sbjct: 252 YEQMDKDEEEEEETQTVSFEVKQEMIEELQKRCIHLEYPLLAEYDFRNDSVNPDI 306
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,237,311
Number of Sequences: 37866
Number of extensions: 716592
Number of successful extensions: 1969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1959
Number of HSP's gapped (non-prelim): 11
length of query: 430
length of database: 18,247,518
effective HSP length: 105
effective length of query: 325
effective length of database: 14,271,588
effective search space: 4638266100
effective search space used: 4638266100
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.