Search of human proteins with 47174864

Search of human proteins with 47174864

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|47174864 exosome component Rrp46 [Homo sapiens]
         (235 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|47174864 exosome component Rrp46 [Homo sapiens]                    461   e-130
gi|9506689 exosome component 4 [Homo sapiens]                          88   6e-18
gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo sa...    64   1e-10
gi|187282992 hypothetical protein LOC392145 [Homo sapiens]             41   0.001
gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo s...    35   0.043
gi|114326550 solute carrier family 7 (cationic amino acid transp...    28   6.8  
gi|114326544 solute carrier family 7 (cationic amino acid transp...    28   6.8  

>gi|47174864 exosome component Rrp46 [Homo sapiens]
          Length = 235

 Score =  461 bits (1186), Expect = e-130
 Identities = 235/235 (100%), Positives = 235/235 (100%)

Query: 1   MEEETHTDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYG 60
           MEEETHTDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYG
Sbjct: 1   MEEETHTDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYG 60

Query: 61  PAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVL 120
           PAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVL
Sbjct: 61  PAEVKVSKEIFNKATLEVILRPKIGLPGVAEKSRERLIRNTCEAVVLGTLHPRTSITVVL 120

Query: 121 QVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAV 180
           QVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAV
Sbjct: 121 QVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAV 180

Query: 181 LTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSKS 235
           LTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSKS
Sbjct: 181 LTFALDSVERKLLMSSTKGLYSDTELQQCLAAAQAASQHVFRFYRESLQRRYSKS 235


>gi|9506689 exosome component 4 [Homo sapiens]
          Length = 245

 Score = 88.2 bits (217), Expect = 6e-18
 Identities = 64/206 (31%), Positives = 97/206 (47%), Gaps = 16/206 (7%)

Query: 28  LRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPAEVKVSKEI-----------FNKATL 76
           LR       + ++ DGSA   QG+T  LA VYGP E++ S+             ++ AT 
Sbjct: 22  LRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATF 81

Query: 77  EVILRPKIGLPGVAEKSRER--LIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCL 134
               R +   P    KS E    +R T EA +L  LHPR+ I + +QV+   G   A C+
Sbjct: 82  STGERKR--RPHGDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACV 139

Query: 135 NAACMALVDAGVPMRALFCGVACALDSDGTLVLDPTSKQEKEARAVLTFALDSVERKLLM 194
           NAA +A++DAG+PMR   C  +     DGT + D +  +E      L  AL     ++ +
Sbjct: 140 NAATLAVLDAGIPMRDFVCACSAGF-VDGTALADLSHVEEAAGGPQLALALLPASGQIAL 198

Query: 195 SSTKGLYSDTELQQCLAAAQAASQHV 220
                   +  L++ L AA  A++ V
Sbjct: 199 LEMDARLHEDHLERVLEAAAQAARDV 224


>gi|17402904 homolog of yeast mRNA transport regulator 3 [Homo
           sapiens]
          Length = 272

 Score = 63.5 bits (153), Expect = 1e-10
 Identities = 67/221 (30%), Positives = 92/221 (41%), Gaps = 25/221 (11%)

Query: 3   EETHTDAKIRAENGTGSSPRGPGCSLRHFACEQNLLSRPDGSASFLQGDTSVLAGVYGPA 62
           EE+       A+       R P   LR       LLS+  GSA    G T VL  V GP 
Sbjct: 12  EESQPPQLYAADEEEAPGTRDP-TRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPR 70

Query: 63  EVKVSKEIFNKA----TLEVILRPKI---------------GLPGVAEKSRERL-IRNTC 102
           + +  +     A         LR ++                 PG  E+    L ++   
Sbjct: 71  QAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPFAGRRRRAPPGGCEERELALALQEAL 130

Query: 103 EAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALF--CGVACALD 160
           E  V    +PR  + V   ++ D GS LA  L AA +AL DAGV M  L   CG++ A  
Sbjct: 131 EPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLVVGCGLSLAPG 190

Query: 161 SDGTLVLDPTSKQEKEARAVLTFALDSVERKL--LMSSTKG 199
              T +LDPT  +E+ A A LT AL  V  ++  L+ S +G
Sbjct: 191 PAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGEG 231


>gi|187282992 hypothetical protein LOC392145 [Homo sapiens]
          Length = 174

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 88  GVAEKSRERLIRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVP 147
           G  E     +++   E  +    +P   +     ++ D GS LA  LN A +AL  AG+ 
Sbjct: 58  GGEEPEPAMVLQEALEPAMCLDRYPHVQLEASELLLEDGGSALATELNTAKLALAYAGME 117

Query: 148 MRALF--CGVACALDSDGTLVLDPTSKQEKEARAVLTFAL 185
           M  L   CG+  A  S  T +LDP   +E+     +T AL
Sbjct: 118 MNDLVVSCGLGLAPGSVPTWLLDPMRLEEEHTAPGVTLAL 157


>gi|188528628 polyribonucleotide nucleotidyltransferase 1 [Homo
           sapiens]
          Length = 783

 Score = 35.4 bits (80), Expect = 0.043
 Identities = 38/148 (25%), Positives = 59/148 (39%), Gaps = 15/148 (10%)

Query: 27  SLRHFACEQNLLSRPDGSASFLQGDTSVL---------AGVYGPAEVKVSKEIFNKATLE 77
           SLR+ +CE ++     GSA F +G T VL         +G+     +     I +K  + 
Sbjct: 366 SLRNVSCEVDMFKTLHGSALFQRGQTQVLCTVTFDSLESGIKSDQVITAINGIKDKNFML 425

Query: 78  VILRPKIG---LPGVAEKSRERLIRNTCEAVVLGTLHPRT---SITVVLQVVSDAGSLLA 131
               P      +  V   +R  L         L  + PR    +I V  +V+   GS   
Sbjct: 426 HYEFPPYATNEIGKVTGLNRRELGHGALAEKALYPVIPRDFPFTIRVTSEVLESNGSSSM 485

Query: 132 CCLNAACMALVDAGVPMRALFCGVACAL 159
                  +AL+D+GVP+ +   GVA  L
Sbjct: 486 ASACGGSLALMDSGVPISSAVAGVAIGL 513


>gi|114326550 solute carrier family 7 (cationic amino acid
           transporter, y+ system), member 3 [Homo sapiens]
          Length = 619

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 94  RERLIRNTCEAVVL-GTLHPRTSITVVL--QVVSDAGSLLACCLNAACMALVDAGVPM 148
           +E  I    E + L G   P  SI   L  Q+V    SLLA  L A C+ L    VP+
Sbjct: 445 QEEAITTESEKLTLWGLFFPLNSIPTPLSGQIVYVCSSLLAVLLTALCLVLAQWSVPL 502


>gi|114326544 solute carrier family 7 (cationic amino acid
           transporter, y+ system), member 3 [Homo sapiens]
          Length = 619

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 94  RERLIRNTCEAVVL-GTLHPRTSITVVL--QVVSDAGSLLACCLNAACMALVDAGVPM 148
           +E  I    E + L G   P  SI   L  Q+V    SLLA  L A C+ L    VP+
Sbjct: 445 QEEAITTESEKLTLWGLFFPLNSIPTPLSGQIVYVCSSLLAVLLTALCLVLAQWSVPL 502


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,695,449
Number of Sequences: 37866
Number of extensions: 364231
Number of successful extensions: 822
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 812
Number of HSP's gapped (non-prelim): 8
length of query: 235
length of database: 18,247,518
effective HSP length: 99
effective length of query: 136
effective length of database: 14,498,784
effective search space: 1971834624
effective search space used: 1971834624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.