Search of human proteins with 108796061

Search of human proteins with 108796061

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|108796061 TROVE domain family, member 2 isoform 3 [Homo
sapiens]
         (263 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|108796061 TROVE domain family, member 2 isoform 3 [Homo sapiens]   527   e-150
gi|31377800 TROVE domain family, member 2 isoform 2 [Homo sapiens]    527   e-150
gi|108796056 TROVE domain family, member 2 isoform 1 [Homo sapiens]   479   e-135
gi|54112397 calcium channel, voltage-dependent, alpha 2/delta 3 ...    29   3.7  
gi|196259799 ring finger protein 212 isoform a [Homo sapiens]          28   6.2  

>gi|108796061 TROVE domain family, member 2 isoform 3 [Homo sapiens]
          Length = 263

 Score =  527 bits (1358), Expect = e-150
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH 60
           MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH
Sbjct: 1   MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH 60

Query: 61  GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV 120
           GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV
Sbjct: 61  GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV 120

Query: 121 AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ 180
           AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ
Sbjct: 121 AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ 180

Query: 181 KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRG 240
           KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRG
Sbjct: 181 KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRG 240

Query: 241 MLDMCGFDTGALDVIRNFTLDMI 263
           MLDMCGFDTGALDVIRNFTLDMI
Sbjct: 241 MLDMCGFDTGALDVIRNFTLDMI 263


>gi|31377800 TROVE domain family, member 2 isoform 2 [Homo sapiens]
          Length = 538

 Score =  527 bits (1358), Expect = e-150
 Identities = 263/263 (100%), Positives = 263/263 (100%)

Query: 1   MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH 60
           MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH
Sbjct: 276 MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH 335

Query: 61  GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV 120
           GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV
Sbjct: 336 GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV 395

Query: 121 AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ 180
           AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ
Sbjct: 396 AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ 455

Query: 181 KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRG 240
           KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRG
Sbjct: 456 KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRG 515

Query: 241 MLDMCGFDTGALDVIRNFTLDMI 263
           MLDMCGFDTGALDVIRNFTLDMI
Sbjct: 516 MLDMCGFDTGALDVIRNFTLDMI 538


>gi|108796056 TROVE domain family, member 2 isoform 1 [Homo sapiens]
          Length = 525

 Score =  479 bits (1233), Expect = e-135
 Identities = 239/241 (99%), Positives = 240/241 (99%)

Query: 1   MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH 60
           MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH
Sbjct: 276 MPLTALLRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKKARIHPFHILIALETYKTGH 335

Query: 61  GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV 120
           GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV
Sbjct: 336 GLRGKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASMNQRVLGSILNASTV 395

Query: 121 AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ 180
           AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ
Sbjct: 396 AAAMCMVVTRTEKDSYVVAFSDEMVPCPVTTDMTLQQVLMAMSQIPAGGTDCSLPMIWAQ 455

Query: 181 KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRG 240
           KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDR 
Sbjct: 456 KTNTPADVFIVFTDNETFAGGVHPAIALREYRKKMDIPAKLIVCGMTSNGFTIADPDDRA 515

Query: 241 M 241
           +
Sbjct: 516 L 516


>gi|54112397 calcium channel, voltage-dependent, alpha 2/delta 3
           subunit [Homo sapiens]
          Length = 1091

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 66  LKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASM 106
           +KW PDE  + A D    K +     + K  ++ VDVS SM
Sbjct: 227 IKWEPDENGVIAFDCRNRKWYIQAATSPKDVVILVDVSGSM 267


>gi|196259799 ring finger protein 212 isoform a [Homo sapiens]
          Length = 297

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 38/199 (19%), Positives = 78/199 (39%), Gaps = 17/199 (8%)

Query: 7   LRNLGKMTANSVLEPGNSEVSLVCEKLCNEKLLKK---ARIHPFHILIALETYKTGHGLR 63
           L N G +  ++ L  G     L+C+  C   LL K   A I  F + I     K      
Sbjct: 22  LTNCGHVYCDACLGKGKKNECLICKAPCRTVLLSKHTDADIQAFFMSIDSLCKKYSRETS 81

Query: 64  GKLKWRPDEEILKALDAAFYKTFKTVEPTGKRFLLAVDVSASM---NQRVLGSILNASTV 120
             L+++  E+  K L A + +    +E + ++ +L ++   SM    Q    +I ++ + 
Sbjct: 82  QILEFQ--EKHRKRLLAFYREKISRLEESLRKSVLQIEQLQSMRSSQQTAFSTIKSSVST 139

Query: 121 AAAMCMVVTRTEKDSYVVAFSDEMVPCPV-TTDMTLQQVLMAMSQIPAGG--------TD 171
               C++   +     + +   ++ P P+  +++      ++M   P  G        + 
Sbjct: 140 KPHGCLLPPHSSAPDRLESMEVDLSPSPIRKSEIAAGPARISMISPPQDGRMGPHLTASF 199

Query: 172 CSLPMIWAQKTNTPADVFI 190
           C +P +   K   P +  I
Sbjct: 200 CFIPWLTLSKPPVPGECVI 218


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,420,208
Number of Sequences: 37866
Number of extensions: 383574
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 5
length of query: 263
length of database: 18,247,518
effective HSP length: 100
effective length of query: 163
effective length of database: 14,460,918
effective search space: 2357129634
effective search space used: 2357129634
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.