Search of human proteins with 45505180

Search of human proteins with 45505180

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45505180 per1-like domain containing 1 [Homo sapiens]
         (320 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45505180 per1-like domain containing 1 [Homo sapiens]              669   0.0  
gi|4507005 solute carrier family 22 member 5 [Homo sapiens]            30   2.9  
gi|78711824 succinate dehydrogenase complex, subunit C isoform 4...    30   3.7  
gi|78711822 succinate dehydrogenase complex, subunit C isoform 3...    30   3.7  
gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 ...    30   3.7  
gi|12965176 taste receptor, type 2, member 7 [Homo sapiens]            30   3.7  
gi|155369255 hypothetical protein LOC642502 [Homo sapiens]             30   3.7  

>gi|45505180 per1-like domain containing 1 [Homo sapiens]
          Length = 320

 Score =  669 bits (1727), Expect = 0.0
 Identities = 320/320 (100%), Positives = 320/320 (100%)

Query: 1   MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLA 60
           MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLA
Sbjct: 1   MAGLAARLVLLAGAAALASGSQGDREPVYRDCVLQCEEQNCSGGALNHFRSRQPIYMSLA 60

Query: 61  GWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLV 120
           GWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLV
Sbjct: 61  GWTCRDDCKYECMWVTVGLYLQEGHKVPQFHGKWPFSRFLFFQEPASAVASFLNGLASLV 120

Query: 121 MLCRYRTFVPASSPMYHTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSI 180
           MLCRYRTFVPASSPMYHTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSI
Sbjct: 121 MLCRYRTFVPASSPMYHTCVAFAWVSLNAWFWSTVFHTRDTDLTEKMDYFCASTVILHSI 180

Query: 181 YLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWL 240
           YLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWL
Sbjct: 181 YLCCVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIRFDYGYNLVANVAIGLVNVVWWL 240

Query: 241 AWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFS 300
           AWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFS
Sbjct: 241 AWCLWNQRRLPHVRKCVVVVLLLQGLSLLELLDFPPLFWVLDAHAIWHISTIPVHVLFFS 300

Query: 301 FLEDDSLYLLKESEDKFKLD 320
           FLEDDSLYLLKESEDKFKLD
Sbjct: 301 FLEDDSLYLLKESEDKFKLD 320


>gi|4507005 solute carrier family 22 member 5 [Homo sapiens]
          Length = 557

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 81  LQEGHKVPQFHGKW-PFSRFLFFQEPASAVASFLNGLASLVMLC--RYRTFVP 130
           +++  +V  F G+W PF R +FF   AS + +   GL+S+ ++    +R  VP
Sbjct: 1   MRDYDEVTAFLGEWGPFQRLIFFLLSASIIPNGFTGLSSVFLIATPEHRCRVP 53


>gi|78711824 succinate dehydrogenase complex, subunit C isoform 4
           precursor [Homo sapiens]
          Length = 116

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 184 CVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR-FDYGYNLVANVAIGLV-------- 234
           C R  G+   A VS F    LL+     SYL L++    G  L+      LV        
Sbjct: 17  CHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 76

Query: 235 NVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLEL 271
           N +  L W L    ++P + +  VVVL+L  LS + L
Sbjct: 77  NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGL 113


>gi|78711822 succinate dehydrogenase complex, subunit C isoform 3
           precursor [Homo sapiens]
          Length = 135

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 184 CVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR-FDYGYNLVANVAIGLV-------- 234
           C R  G+   A VS F    LL+     SYL L++    G  L+      LV        
Sbjct: 36  CHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 95

Query: 235 NVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLEL 271
           N +  L W L    ++P + +  VVVL+L  LS + L
Sbjct: 96  NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGL 132


>gi|4506863 succinate dehydrogenase complex, subunit C isoform 1
           precursor [Homo sapiens]
          Length = 169

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 184 CVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR-FDYGYNLVANVAIGLV-------- 234
           C R  G+   A VS F    LL+     SYL L++    G  L+      LV        
Sbjct: 70  CHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 129

Query: 235 NVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLEL 271
           N +  L W L    ++P + +  VVVL+L  LS + L
Sbjct: 130 NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGL 166


>gi|12965176 taste receptor, type 2, member 7 [Homo sapiens]
          Length = 318

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 26/113 (23%), Positives = 48/113 (42%), Gaps = 31/113 (27%)

Query: 209 VHVSYLSLIRFDYGYNLVANVAIGLVNVVWWLAWCLWNQRRLPHV----------RKCVV 258
           V  + L L   ++   ++ N  IGLVN + W+      +R++  +          R C++
Sbjct: 5   VQTTLLFLAVGEFSVGILGNAFIGLVNCMDWV-----KKRKIASIDLILTSLAISRICLL 59

Query: 259 VVLLLQGLSL------------LELLDFPPLFWVLDAH-AIWHISTIPVHVLF 298
            V+LL    L            + ++DF   FW L  H +IW  + + ++  F
Sbjct: 60  CVILLDCFILVLYPDVYATGKEMRIIDF---FWTLTNHLSIWFATCLSIYYFF 109


>gi|155369255 hypothetical protein LOC642502 [Homo sapiens]
          Length = 135

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 184 CVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR-FDYGYNLVANVAIGLV-------- 234
           C R  G+   A VS F    LL+     SYL L++    G  L+      LV        
Sbjct: 36  CHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 95

Query: 235 NVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLEL 271
           N +  L W L    ++P + +  VVVL+L  LS + L
Sbjct: 96  NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGL 132


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.140    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,366,407
Number of Sequences: 37866
Number of extensions: 536096
Number of successful extensions: 1214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1209
Number of HSP's gapped (non-prelim): 7
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.