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Search of human proteins with 4507645
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507645 triosephosphate isomerase 1 isoform 1 [Homo sapiens]
(249 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|226529917 triosephosphate isomerase 1 isoform 2 [Homo sapiens] 502 e-142
gi|4507645 triosephosphate isomerase 1 isoform 1 [Homo sapiens] 502 e-142
gi|239752097 PREDICTED: hypothetical protein XP_002348110 [Homo ... 31 0.88
gi|239746602 PREDICTED: hypothetical protein XP_002343796 [Homo ... 31 0.88
gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo sapi... 28 5.7
gi|239755033 PREDICTED: hypothetical protein XP_002346199 [Homo ... 28 7.5
gi|239749533 PREDICTED: hypothetical protein XP_002347079 [Homo ... 28 7.5
gi|239743682 PREDICTED: hypothetical protein XP_002342945 [Homo ... 28 7.5
gi|148612863 transient receptor potential cation channel, subfam... 28 7.5
gi|148491091 solute carrier family 25 member 24 isoform 1 [Homo ... 28 7.5
gi|47458041 solute carrier family 25 member 24 isoform 2 [Homo s... 28 7.5
gi|50959167 PTPN13-like, Y-linked 2 [Homo sapiens] 28 9.7
gi|22507417 PTPN13-like, Y-linked [Homo sapiens] 28 9.7
>gi|226529917 triosephosphate isomerase 1 isoform 2 [Homo sapiens]
Length = 286
Score = 502 bits (1293), Expect = e-142
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 60
MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 38 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 97
Query: 61 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120
AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 98 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 157
Query: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180
GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ
Sbjct: 158 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 217
Query: 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240
QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 218 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 277
Query: 241 FVDIINAKQ 249
FVDIINAKQ
Sbjct: 278 FVDIINAKQ 286
>gi|4507645 triosephosphate isomerase 1 isoform 1 [Homo sapiens]
Length = 249
Score = 502 bits (1293), Expect = e-142
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 60
MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI
Sbjct: 1 MAPSRKFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDPKI 60
Query: 61 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120
AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE
Sbjct: 61 AVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAE 120
Query: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180
GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ
Sbjct: 121 GLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQ 180
Query: 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240
QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE
Sbjct: 181 QAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPE 240
Query: 241 FVDIINAKQ 249
FVDIINAKQ
Sbjct: 241 FVDIINAKQ 249
>gi|239752097 PREDICTED: hypothetical protein XP_002348110 [Homo
sapiens]
Length = 413
Score = 31.2 bits (69), Expect = 0.88
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 168 VWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDV 227
VWA + + H++ W+KS + R +GGSV+ TC + +S+ V
Sbjct: 4 VWARAGQERGRAFWLKGPHKEANEWVKSVAVCLLGVVVRASHGGSVSSGTCSQRSSEEKV 63
Query: 228 DG 229
G
Sbjct: 64 RG 65
>gi|239746602 PREDICTED: hypothetical protein XP_002343796 [Homo
sapiens]
Length = 413
Score = 31.2 bits (69), Expect = 0.88
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 168 VWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDV 227
VWA + + H++ W+KS + R +GGSV+ TC + +S+ V
Sbjct: 4 VWARAGQERGRAFWLKGPHKEANEWVKSVAVCLLGVVVRASHGGSVSSGTCSQRSSEEKV 63
Query: 228 DG 229
G
Sbjct: 64 RG 65
>gi|153946397 Na+/K+ -ATPase alpha 4 subunit isoform 1 [Homo
sapiens]
Length = 1029
Score = 28.5 bits (62), Expect = 5.7
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 24/83 (28%)
Query: 1 MAPSRKFFVGGNWKM--NGRKQSLGELIGTLNAAKVPADTEVVCAPPTAYIDFARQKLDP 58
M P + + G KM N ++ LG+L+ +VPAD +
Sbjct: 172 MVPQQALVIRGGEKMQINVQEVVLGDLVEIKGGDRVPADLRL------------------ 213
Query: 59 KIAVAAQNCYKVTNGAFTGEISP 81
++AQ C KV N + TGE P
Sbjct: 214 ---ISAQGC-KVDNSSLTGESEP 232
>gi|239755033 PREDICTED: hypothetical protein XP_002346199 [Homo
sapiens]
Length = 537
Score = 28.1 bits (61), Expect = 7.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 96 HSERRHVFGESDELIGQKVAHALAEGLGVIACIGEK 131
H HV G DE + + H LA GLGV +G++
Sbjct: 203 HGLDGHVHGWGDEGLKHDLGHLLAAGLGVQGGLGQQ 238
>gi|239749533 PREDICTED: hypothetical protein XP_002347079 [Homo
sapiens]
Length = 537
Score = 28.1 bits (61), Expect = 7.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 96 HSERRHVFGESDELIGQKVAHALAEGLGVIACIGEK 131
H HV G DE + + H LA GLGV +G++
Sbjct: 203 HGLDGHVHGWGDEGLKHDLGHLLAAGLGVQGGLGQQ 238
>gi|239743682 PREDICTED: hypothetical protein XP_002342945 [Homo
sapiens]
Length = 537
Score = 28.1 bits (61), Expect = 7.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 96 HSERRHVFGESDELIGQKVAHALAEGLGVIACIGEK 131
H HV G DE + + H LA GLGV +G++
Sbjct: 203 HGLDGHVHGWGDEGLKHDLGHLLAAGLGVQGGLGQQ 238
>gi|148612863 transient receptor potential cation channel, subfamily
M, member 7 [Homo sapiens]
Length = 1865
Score = 28.1 bits (61), Expect = 7.5
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 154 NVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKS--NVSDAVA 202
+V++W +V+AY +AI + +A +V++K++ W N+SD +A
Sbjct: 883 SVQEW--IVIAYIFTYAIEKVREIFMSEAGKVNQKIKVWFSDYFNISDTIA 931
>gi|148491091 solute carrier family 25 member 24 isoform 1 [Homo
sapiens]
Length = 477
Score = 28.1 bits (61), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 185 VHEKLRG-WLKSNVSDAVAQSTRIIYGGSVTGATCKELASQP 225
V+E L+ WL + D+V ++ G +TC +LAS P
Sbjct: 364 VYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYP 405
>gi|47458041 solute carrier family 25 member 24 isoform 2 [Homo
sapiens]
Length = 458
Score = 28.1 bits (61), Expect = 7.5
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 185 VHEKLRG-WLKSNVSDAVAQSTRIIYGGSVTGATCKELASQP 225
V+E L+ WL + D+V ++ G +TC +LAS P
Sbjct: 345 VYELLKSYWLDNFAKDSVNPGVMVLLGCGALSSTCGQLASYP 386
>gi|50959167 PTPN13-like, Y-linked 2 [Homo sapiens]
Length = 147
Score = 27.7 bits (60), Expect = 9.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 189 LRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELA 222
L W + N++ Q I+Y TG+ C EL+
Sbjct: 9 LLSWRQDNLNGTDCQGCNILYFSETTGSMCSELS 42
>gi|22507417 PTPN13-like, Y-linked [Homo sapiens]
Length = 147
Score = 27.7 bits (60), Expect = 9.7
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 189 LRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELA 222
L W + N++ Q I+Y TG+ C EL+
Sbjct: 9 LLSWRQDNLNGTDCQGCNILYFSETTGSMCSELS 42
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,451,117
Number of Sequences: 37866
Number of extensions: 388254
Number of successful extensions: 669
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 660
Number of HSP's gapped (non-prelim): 13
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.