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Search of human proteins with 4506863
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506863 succinate dehydrogenase complex, subunit C isoform 1
precursor [Homo sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506863 succinate dehydrogenase complex, subunit C isoform 1 ... 346 6e-96
gi|78711822 succinate dehydrogenase complex, subunit C isoform 3... 258 1e-69
gi|155369255 hypothetical protein LOC642502 [Homo sapiens] 258 1e-69
gi|78711824 succinate dehydrogenase complex, subunit C isoform 4... 223 5e-59
gi|78711820 succinate dehydrogenase complex, subunit C isoform 2... 171 3e-43
gi|239749866 PREDICTED: similar to succinate dehydrogenase compl... 153 8e-38
gi|239744168 PREDICTED: similar to succinate dehydrogenase compl... 153 8e-38
gi|45505180 per1-like domain containing 1 [Homo sapiens] 30 1.3
gi|22748777 carnitine palmitoyltransferase 1C isoform 2 [Homo sa... 30 1.3
gi|209862905 carnitine palmitoyltransferase 1C isoform 1 [Homo s... 30 1.3
gi|52218852 olfactory receptor, family 10, subfamily K, member 1... 28 4.9
>gi|4506863 succinate dehydrogenase complex, subunit C isoform 1
precursor [Homo sapiens]
Length = 169
Score = 346 bits (887), Expect = 6e-96
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 61 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 120
WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
Sbjct: 61 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 120
Query: 121 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169
VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 121 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169
>gi|78711822 succinate dehydrogenase complex, subunit C isoform 3
precursor [Homo sapiens]
Length = 135
Score = 258 bits (660), Expect = 1e-69
Identities = 135/169 (79%), Positives = 135/169 (79%), Gaps = 34/169 (20%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
Query: 61 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 120
WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
Sbjct: 27 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 86
Query: 121 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169
VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 87 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 135
>gi|155369255 hypothetical protein LOC642502 [Homo sapiens]
Length = 135
Score = 258 bits (660), Expect = 1e-69
Identities = 135/169 (79%), Positives = 135/169 (79%), Gaps = 34/169 (20%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRN
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRN---------------------------------- 26
Query: 61 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 120
WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL
Sbjct: 27 WSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFAL 86
Query: 121 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169
VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 87 VFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 135
>gi|78711824 succinate dehydrogenase complex, subunit C isoform 4
precursor [Homo sapiens]
Length = 116
Score = 223 bits (569), Expect = 5e-59
Identities = 110/112 (98%), Positives = 111/112 (99%)
Query: 58 IYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK 117
+ SWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK
Sbjct: 5 LLSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAK 64
Query: 118 FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 169
FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM
Sbjct: 65 FALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGLAAM 116
>gi|78711820 succinate dehydrogenase complex, subunit C isoform 2
precursor [Homo sapiens]
Length = 150
Score = 171 bits (433), Expect = 3e-43
Identities = 81/82 (98%), Positives = 81/82 (98%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
Query: 61 WSLPMAMSICHRGTGIALSAGV 82
WSLPMAMSICHRGTGIALSA V
Sbjct: 61 WSLPMAMSICHRGTGIALSADV 82
>gi|239749866 PREDICTED: similar to succinate dehydrogenase
complex, subunit C [Homo sapiens]
Length = 150
Score = 153 bits (386), Expect = 8e-38
Identities = 70/82 (85%), Positives = 74/82 (90%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 61 WSLPMAMSICHRGTGIALSAGV 82
WSLPMAM+ICH TG AL A V
Sbjct: 61 WSLPMAMAICHHDTGTALRADV 82
>gi|239744168 PREDICTED: similar to succinate dehydrogenase
complex, subunit C [Homo sapiens]
Length = 150
Score = 153 bits (386), Expect = 8e-38
Identities = 70/82 (85%), Positives = 74/82 (90%)
Query: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTAKEEMERFWNKNIGSNRPLSPHITIYS 60
MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTT K+EMERFWNKN G NRP+SPH+TIYS
Sbjct: 1 MAALLLRHVGRHCLRAHFSPQLCIRNAVPLGTTGKQEMERFWNKNTGLNRPVSPHVTIYS 60
Query: 61 WSLPMAMSICHRGTGIALSAGV 82
WSLPMAM+ICH TG AL A V
Sbjct: 61 WSLPMAMAICHHDTGTALRADV 82
>gi|45505180 per1-like domain containing 1 [Homo sapiens]
Length = 320
Score = 29.6 bits (65), Expect = 1.3
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 70 CHRGTGIALSAGVSLFGMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 129
C R G+ A VS F LL+ SYL L++ G L+ LV
Sbjct: 184 CVRTVGLQHPAVVSAFRALLLLMLTVHVSYLSLIR-FDYGYNLVANVAIGLV-------- 234
Query: 130 NGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVLSSMGL 166
N + L W L ++P + + VVVL+L LS + L
Sbjct: 235 NVVWWLAWCLWNQRRLPHVRKCVVVVLLLQGLSLLEL 271
>gi|22748777 carnitine palmitoyltransferase 1C isoform 2 [Homo
sapiens]
Length = 803
Score = 29.6 bits (65), Expect = 1.3
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
Query: 35 KEEMERFWNKNIGSNRPLSPHITIYSWS---------LPMAMSICHRGTGIALSAGVSLF 85
K + RFWN + P SP ++ +S L ++ + + + G
Sbjct: 40 KRHLSRFWNDFLTGVFPASPLSWLFLFSAIQLAWFLQLDPSLGLMEKIKELLPDWGGQHH 99
Query: 86 GMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 129
G+ +L F S CL ALI T AL L YH W
Sbjct: 100 GLRGVLAAALFAS--------CLWGALIFTLHVALRLLLSYHGW 135
>gi|209862905 carnitine palmitoyltransferase 1C isoform 1 [Homo
sapiens]
Length = 792
Score = 29.6 bits (65), Expect = 1.3
Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
Query: 35 KEEMERFWNKNIGSNRPLSPHITIYSWS---------LPMAMSICHRGTGIALSAGVSLF 85
K + RFWN + P SP ++ +S L ++ + + + G
Sbjct: 40 KRHLSRFWNDFLTGVFPASPLSWLFLFSAIQLAWFLQLDPSLGLMEKIKELLPDWGGQHH 99
Query: 86 GMSALLLPGNFESYLELVKSLCLGPALIHTAKFALVFPLMYHTW 129
G+ +L F S CL ALI T AL L YH W
Sbjct: 100 GLRGVLAAALFAS--------CLWGALIFTLHVALRLLLSYHGW 135
>gi|52218852 olfactory receptor, family 10, subfamily K, member 1
[Homo sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 4.9
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 102 LVKSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVL 161
L+ + C + +LVF L +H+ N + H D+ LK+ + SG LV+ +L
Sbjct: 144 LMAAACACGFTVSLVTTSLVFHLPFHSSNQLHHFFCDISPVLKLASQH-SGFSQLVIFML 202
Query: 162 SSMGL 166
L
Sbjct: 203 GVFAL 207
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.139 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,554,726
Number of Sequences: 37866
Number of extensions: 279726
Number of successful extensions: 597
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 13
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.