Search of human proteins with 4505947

Search of human proteins with 4505947

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505947 DNA directed RNA polymerase II polypeptide G [Homo
sapiens]
         (172 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505947 DNA directed RNA polymerase II polypeptide G [Homo sa...   352   1e-97
gi|65301161 polymerase (RNA) III (DNA directed) polypeptide H (2...    38   0.005
gi|24475814 polymerase (RNA) III (DNA directed) polypeptide H (2...    38   0.005
gi|6005942 valosin-containing protein [Homo sapiens]                   29   1.8  
gi|223671870 inhibitor of kappa light polypeptide gene enhancer ...    29   1.8  
gi|52317235 olfactory receptor, family 4, subfamily C, member 3 ...    27   6.7  

>gi|4505947 DNA directed RNA polymerase II polypeptide G [Homo
           sapiens]
          Length = 172

 Score =  352 bits (902), Expect = 1e-97
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
           MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120
           PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172
           PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172


>gi|65301161 polymerase (RNA) III (DNA directed) polypeptide H
           (22.9kD) isoform a [Homo sapiens]
          Length = 204

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
           MF  + +   + + P  F   L +++ ++L  ++        G  I +  I  +    + 
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEF 119
           PG G     V ++ +VF PF  E++   +   +  G+   +G      I   S+    +F
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 120 DPNSNPPCYKTMDE----DIVIQQDDEIRLKIV 148
           D       ++   E    D+ +   +EIR ++V
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVV 153


>gi|24475814 polymerase (RNA) III (DNA directed) polypeptide H
           (22.9kD) isoform a [Homo sapiens]
          Length = 204

 Score = 37.7 bits (86), Expect = 0.005
 Identities = 30/153 (19%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60
           MF  + +   + + P  F   L +++ ++L  ++        G  I +  I  +    + 
Sbjct: 1   MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVF 60

Query: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPM-SCFISRHSIPSEMEF 119
           PG G     V ++ +VF PF  E++   +   +  G+   +G      I   S+    +F
Sbjct: 61  PGDGASHTKVHFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKF 120

Query: 120 DPNSNPPCYKTMDE----DIVIQQDDEIRLKIV 148
           D       ++   E    D+ +   +EIR ++V
Sbjct: 121 DEAEQVWVWEYETEEGAHDLYMDTGEEIRFRVV 153


>gi|6005942 valosin-containing protein [Homo sapiens]
          Length = 806

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 21/160 (13%)

Query: 19  GPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTT-IDNIGAGVIQPGR--GFVLYPVK---- 71
           G    + V  ++ TE++G  T K  F+I  T   D I   +++PGR    +  P+     
Sbjct: 593 GGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKS 652

Query: 72  ----YKAIVFRPFKGEVVD----AVVTQVNKVGLFTEIGPMSCFIS-RHSIPSEM--EFD 120
                KA + +    + VD    A +T        TEI   +C ++ R SI SE+  E +
Sbjct: 653 RVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERE 712

Query: 121 PNSNPPCYKTMDEDIV--IQQDD-EIRLKIVGTRVDKNDI 157
             +NP   +  ++D V  I++D  E  ++     V  NDI
Sbjct: 713 RQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDI 752


>gi|223671870 inhibitor of kappa light polypeptide gene enhancer in
           B-cells, kinase gamma isoform b [Homo sapiens]
          Length = 487

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 65  FVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEM--EFDPN 122
           F   PVK  +I+  P  GE   +  T V K   F +  P+ C+++RH   S++     P+
Sbjct: 26  FPSLPVKLSSIIEVPSGGERCCSRRTLVYKARAFWKGAPLPCWMNRHLWKSQLCEMVQPS 85

Query: 123 SNPPCYKTMDEDIV 136
             P      D+D++
Sbjct: 86  GGP----AADQDVL 95


>gi|52317235 olfactory receptor, family 4, subfamily C, member 3
           [Homo sapiens]
          Length = 329

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 2   FYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIG 55
           F H  ++  ++L   + GPN++N     L+  +E  CT  Y  VI +  + N G
Sbjct: 178 FLHSLVQLLLVLWLPFCGPNVINHFACDLYPLLEVACTNTY--VIGLLVVANSG 229


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.143    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,427,946
Number of Sequences: 37866
Number of extensions: 254438
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 6
length of query: 172
length of database: 18,247,518
effective HSP length: 95
effective length of query: 77
effective length of database: 14,650,248
effective search space: 1128069096
effective search space used: 1128069096
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.