Search of human proteins with 4505587

Search of human proteins with 4505587

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505587 platelet-activating factor acetylhydrolase, isoform
Ib, gamma subunit [Homo sapiens]
         (231 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|225543099 platelet-activating factor acetylhydrolase, isoform...   481   e-136
gi|225543097 platelet-activating factor acetylhydrolase, isoform...   481   e-136
gi|4505587 platelet-activating factor acetylhydrolase, isoform I...   481   e-136
gi|4505585 platelet-activating factor acetylhydrolase, isoform I...   312   1e-85
gi|144446030 lymphocyte antigen 75 [Homo sapiens]                      29   3.0  
gi|7661586 TBC1 domain family, member 29 [Homo sapiens]                29   3.0  
gi|53832021 carboxypeptidase M precursor [Homo sapiens]                28   6.6  
gi|38327526 carboxypeptidase M precursor [Homo sapiens]                28   6.6  
gi|6631081 carboxypeptidase M precursor [Homo sapiens]                 28   6.6  
gi|239744413 PREDICTED: hypothetical protein LOC390213 [Homo sap...    28   8.7  

>gi|225543099 platelet-activating factor acetylhydrolase, isoform
           Ib, gamma subunit [Homo sapiens]
          Length = 231

 Score =  481 bits (1239), Expect = e-136
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
           MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1   MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60

Query: 61  LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
           LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61  LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120

Query: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180
           VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180

Query: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
           SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP 231


>gi|225543097 platelet-activating factor acetylhydrolase, isoform
           Ib, gamma subunit [Homo sapiens]
          Length = 231

 Score =  481 bits (1239), Expect = e-136
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
           MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1   MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60

Query: 61  LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
           LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61  LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120

Query: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180
           VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180

Query: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
           SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP 231


>gi|4505587 platelet-activating factor acetylhydrolase, isoform Ib,
           gamma subunit [Homo sapiens]
          Length = 231

 Score =  481 bits (1239), Expect = e-136
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60
           MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE
Sbjct: 1   MSGEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRE 60

Query: 61  LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120
           LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI
Sbjct: 61  LFSPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAI 120

Query: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180
           VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH
Sbjct: 121 VQLVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVH 180

Query: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
           SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP 231


>gi|4505585 platelet-activating factor acetylhydrolase, isoform Ib,
           beta subunit [Homo sapiens]
          Length = 229

 Score =  312 bits (800), Expect = 1e-85
 Identities = 141/216 (65%), Positives = 179/216 (82%)

Query: 3   GEENPASKPTPVQDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELF 62
           G+ NPA+ P   +D+QGD RWMS H+RFV D KDKEP+V+F+GDS+VQLM Q EIWRELF
Sbjct: 4   GDSNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELF 63

Query: 63  SPLHALNFGIGGDGTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQ 122
           SPLHALNFGIGGD T+HVLWRL+NGELE+I+PK++VVWVGTNNH +TAE+V GGI+AIVQ
Sbjct: 64  SPLHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQ 123

Query: 123 LVNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVHSD 182
           L+N RQPQA+++VLGLLPRG+ PNPLR+KN +VN+L++ +L        LD D GFVHSD
Sbjct: 124 LINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLPKLANVQLLDTDGGFVHSD 183

Query: 183 GTISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQ 218
           G IS HDM+D+LHL+  GY  +C+ LH L+++LL +
Sbjct: 184 GAISCHDMFDFLHLTGGGYAKICKPLHELIMQLLEE 219


>gi|144446030 lymphocyte antigen 75 [Homo sapiens]
          Length = 1722

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 47   SLVQLMHQCEIWRELFSPLHALNFGIGGDGTQHV-LWRLENGELE 90
            S+  L+H   +W  LFS    LNFG       H   W   NG+LE
Sbjct: 1151 SVQALLHNSSLWIGLFSQDDELNFGWSDGKRLHFSRWAETNGQLE 1195


>gi|7661586 TBC1 domain family, member 29 [Homo sapiens]
          Length = 150

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 203 PVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
           P+C +LHS L  L A +  +G  LL+  P
Sbjct: 86  PICESLHSSLQALTASESSRGPSLLQTPP 114


>gi|53832021 carboxypeptidase M precursor [Homo sapiens]
          Length = 443

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 15  QDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCE-IWRELFSPLHALNFGIG 73
           + V+G   W+ +  RF  + +   PE  ++ +     MH  E + REL   LH +++ + 
Sbjct: 50  KSVKGRNLWVLVVGRFPKEHRIGIPEFKYVAN-----MHGDETVGRELL--LHLIDYLVT 102

Query: 74  GDGTQHVLWRLENGELEHIRPKI 96
            DG    +  L N    HI P +
Sbjct: 103 SDGKDPEITNLINSTRIHIMPSM 125


>gi|38327526 carboxypeptidase M precursor [Homo sapiens]
          Length = 443

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 15  QDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCE-IWRELFSPLHALNFGIG 73
           + V+G   W+ +  RF  + +   PE  ++ +     MH  E + REL   LH +++ + 
Sbjct: 50  KSVKGRNLWVLVVGRFPKEHRIGIPEFKYVAN-----MHGDETVGRELL--LHLIDYLVT 102

Query: 74  GDGTQHVLWRLENGELEHIRPKI 96
            DG    +  L N    HI P +
Sbjct: 103 SDGKDPEITNLINSTRIHIMPSM 125


>gi|6631081 carboxypeptidase M precursor [Homo sapiens]
          Length = 443

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 15  QDVQGDGRWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCE-IWRELFSPLHALNFGIG 73
           + V+G   W+ +  RF  + +   PE  ++ +     MH  E + REL   LH +++ + 
Sbjct: 50  KSVKGRNLWVLVVGRFPKEHRIGIPEFKYVAN-----MHGDETVGRELL--LHLIDYLVT 102

Query: 74  GDGTQHVLWRLENGELEHIRPKI 96
            DG    +  L N    HI P +
Sbjct: 103 SDGKDPEITNLINSTRIHIMPSM 125


>gi|239744413 PREDICTED: hypothetical protein LOC390213 [Homo
           sapiens]
          Length = 431

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 29/108 (26%), Positives = 41/108 (37%), Gaps = 11/108 (10%)

Query: 124 VNERQPQARVVVLGLLPRGQHPNPLREKNRQVNELVRAALAGHPRAHFLDADPGFVHSDG 183
           V  RQPQ+  + L L P      P+        +  R ++  H     +D  PG +    
Sbjct: 31  VRSRQPQSSGISLSLRPPPPVWVPMAGTAAAGGQPPRVSMQEHMA---IDVSPGPIRPIR 87

Query: 184 TISHHDMYDYLHLSRLGYTPVCRALHSLLLRLLAQDQGQGAPLLEPAP 231
            ISH+  + Y             ALH   LR  A    + AP L+P P
Sbjct: 88  LISHYFPHFYPFAEP--------ALHPPNLRPAAASAVRSAPQLQPDP 127


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,607,699
Number of Sequences: 37866
Number of extensions: 500868
Number of successful extensions: 969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 10
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.