Search of human proteins with 4503609

Search of human proteins with 4503609

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4503609 electron-transfer-flavoprotein, beta polypeptide
isoform 1 [Homo sapiens]
         (255 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4503609 electron-transfer-flavoprotein, beta polypeptide isof...   494   e-140
gi|62420877 electron-transfer-flavoprotein, beta polypeptide iso...   461   e-130
gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]        29   3.5  
gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]        29   3.5  
gi|4502175 apical protein of Xenopus-like [Homo sapiens]               29   3.5  
gi|197304786 IQ motif and Sec7 domain 1 isoform a [Homo sapiens]       29   4.6  
gi|50582989 IQ motif and Sec7 domain 1 isoform b [Homo sapiens]        29   4.6  
gi|154354962 inner membrane protein, mitochondrial isoform 2 [Ho...    28   5.9  

>gi|4503609 electron-transfer-flavoprotein, beta polypeptide isoform
           1 [Homo sapiens]
          Length = 255

 Score =  494 bits (1271), Expect = e-140
 Identities = 255/255 (100%), Positives = 255/255 (100%)

Query: 1   MAELRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKE 60
           MAELRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKE
Sbjct: 1   MAELRVLVAVKRVIDYAVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKE 60

Query: 61  VIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLV 120
           VIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLV
Sbjct: 61  VIAVSCGPAQCQETIRTALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLV 120

Query: 121 LLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAV 180
           LLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAV
Sbjct: 121 LLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAV 180

Query: 181 VTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVE 240
           VTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVE
Sbjct: 181 VTADLRLNEPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVE 240

Query: 241 TTEDLVAKLKEIGRI 255
           TTEDLVAKLKEIGRI
Sbjct: 241 TTEDLVAKLKEIGRI 255


>gi|62420877 electron-transfer-flavoprotein, beta polypeptide
           isoform 2 [Homo sapiens]
          Length = 346

 Score =  461 bits (1186), Expect = e-130
 Identities = 237/239 (99%), Positives = 238/239 (99%)

Query: 17  AVKIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIR 76
           A +IRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIR
Sbjct: 108 AGQIRVKPDRTGVVTDGVKHSMNPFCEIAVEEAVRLKEKKLVKEVIAVSCGPAQCQETIR 167

Query: 77  TALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQ 136
           TALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQ
Sbjct: 168 TALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQ 227

Query: 137 MTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLP 196
           MTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLP
Sbjct: 228 MTAGFLDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVTADLRLNEPRYATLP 287

Query: 197 NIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255
           NIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI
Sbjct: 288 NIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 346


>gi|53832026 IQ motif and Sec7 domain 2 isoform 2 [Homo sapiens]
          Length = 949

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 149 FASQVTLEGDKLKVEREIDGGLETLRLKLPAVVT-------------ADLRLNEPRYATL 195
           F S + ++G+  KVER I+   +   +  PA+V              A + LN   Y+  
Sbjct: 635 FQSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMYS-- 692

Query: 196 PNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255
           P++   +K K++       GVD    +    +    QR  G ++ T +D V++++ + R+
Sbjct: 693 PSVKAERKMKLDDFIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDDHVSQVQAVERM 752


>gi|162138911 IQ motif and Sec7 domain 2 isoform1 [Homo sapiens]
          Length = 1488

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 15/120 (12%)

Query: 149 FASQVTLEGDKLKVEREIDGGLETLRLKLPAVVT-------------ADLRLNEPRYATL 195
           F S + ++G+  KVER I+   +   +  PA+V              A + LN   Y+  
Sbjct: 840 FQSHIRVQGEAQKVERLIEAFSQRYCVCNPALVRQFRNPDTIFILAFAIILLNTDMYS-- 897

Query: 196 PNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAKLKEIGRI 255
           P++   +K K++       GVD    +    +    QR  G ++ T +D V++++ + R+
Sbjct: 898 PSVKAERKMKLDDFIKNLRGVDNGEDIPRDLLVGIYQRIQGRELRTNDDHVSQVQAVERM 957


>gi|4502175 apical protein of Xenopus-like [Homo sapiens]
          Length = 1616

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%)

Query: 199  MKAKKKKIEVIKPGDLGVDLTSK-LSVISVEDPPQRTAGVKVETTEDLV 246
            MKAK+K +E +K  +L  ++  K  S+  + DP      VK++TT DL+
Sbjct: 1304 MKAKEKTVEDLKSEELAREIVGKDKSLADILDP-----SVKIKTTMDLM 1347


>gi|197304786 IQ motif and Sec7 domain 1 isoform a [Homo sapiens]
          Length = 1114

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 142 LDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVT-------------ADLRLN 188
           LD     F + + ++G+  KVER I+   +   +  P VV              A + LN
Sbjct: 590 LDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCICNPGVVRQFRNPDTIFILAFAIILLN 649

Query: 189 EPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAK 248
              Y+  PN+   +K K+E       GVD    +    +    +R    +++T ED V++
Sbjct: 650 TDMYS--PNVKPERKMKLEDFIKNLRGVDDGEDIPREMLMGIYERIRKRELKTNEDHVSQ 707

Query: 249 LKEIGRI 255
           ++++ ++
Sbjct: 708 VQKVEKL 714


>gi|50582989 IQ motif and Sec7 domain 1 isoform b [Homo sapiens]
          Length = 963

 Score = 28.9 bits (63), Expect = 4.6
 Identities = 29/127 (22%), Positives = 56/127 (44%), Gaps = 15/127 (11%)

Query: 142 LDWPQGTFASQVTLEGDKLKVEREIDGGLETLRLKLPAVVT-------------ADLRLN 188
           LD     F + + ++G+  KVER I+   +   +  P VV              A + LN
Sbjct: 604 LDEALRKFQAHIRVQGEAQKVERLIEAFSQRYCICNPGVVRQFRNPDTIFILAFAIILLN 663

Query: 189 EPRYATLPNIMKAKKKKIEVIKPGDLGVDLTSKLSVISVEDPPQRTAGVKVETTEDLVAK 248
              Y+  PN+   +K K+E       GVD    +    +    +R    +++T ED V++
Sbjct: 664 TDMYS--PNVKPERKMKLEDFIKNLRGVDDGEDIPREMLMGIYERIRKRELKTNEDHVSQ 721

Query: 249 LKEIGRI 255
           ++++ ++
Sbjct: 722 VQKVEKL 728


>gi|154354962 inner membrane protein, mitochondrial isoform 2 [Homo
           sapiens]
          Length = 757

 Score = 28.5 bits (62), Expect = 5.9
 Identities = 37/170 (21%), Positives = 65/170 (38%), Gaps = 20/170 (11%)

Query: 60  EVIAVSCGPAQCQETIRT---ALAMGADRGIHVEVPPAEAERLGPLQVARVLAKLAEKEK 116
           + ++V     Q +E+++T    +  G       E   +      P +VA  LA+  ++E+
Sbjct: 154 DTLSVPAPAVQPEESLKTDHPEIGEGKPTPALSEASSSSIRERPPEEVAARLAQQEKQEQ 213

Query: 117 VDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLKVE------------- 163
           V +  L K +++D   QT  +T   +   Q      V    + LK               
Sbjct: 214 VKIESLAK-SLEDALRQTASVTLQAIA-AQNAAVQAVNAHSNILKAAMDNSEIAGEKKSA 271

Query: 164 --REIDGGLETLRLKLPAVVTADLRLNEPRYATLPNIMKAKKKKIEVIKP 211
             R ++G L+  R  +     A L+  E        I  AKKK++   KP
Sbjct: 272 QWRTVEGALKERRKAVDEAADALLKAKEELEKMKSVIENAKKKEVAGAKP 321


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.135    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,758,933
Number of Sequences: 37866
Number of extensions: 351439
Number of successful extensions: 848
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 846
Number of HSP's gapped (non-prelim): 8
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.