Search of human proteins with 4503607

Search of human proteins with 4503607

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4503607 electron transfer flavoprotein, alpha polypeptide
isoform a [Homo sapiens]
         (333 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4503607 electron transfer flavoprotein, alpha polypeptide iso...   644   0.0  
gi|189181759 electron transfer flavoprotein, alpha polypeptide i...   528   e-150
gi|150170699 kinesin family member 26A [Homo sapiens]                  30   3.9  
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ...    29   6.7  
gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens]          29   6.7  
gi|239755008 PREDICTED: hypothetical protein [Homo sapiens]            28   8.7  

>gi|4503607 electron transfer flavoprotein, alpha polypeptide
           isoform a [Homo sapiens]
          Length = 333

 Score =  644 bits (1661), Expect = 0.0
 Identities = 333/333 (100%), Positives = 333/333 (100%)

Query: 1   MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60
           MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC
Sbjct: 1   MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60

Query: 61  DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120
           DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL
Sbjct: 61  DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120

Query: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180
           PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG
Sbjct: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180

Query: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
           GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240

Query: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
           LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
Sbjct: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300

Query: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333
           KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK
Sbjct: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333


>gi|189181759 electron transfer flavoprotein, alpha polypeptide
           isoform b [Homo sapiens]
          Length = 284

 Score =  528 bits (1359), Expect = e-150
 Identities = 284/333 (85%), Positives = 284/333 (85%), Gaps = 49/333 (14%)

Query: 1   MFRAAAPGQLRRAASLLRFQSTLVIAEHANDSLAPITLNTITAATRLGGEVSCLVAGTKC 60
           MFRAAAPGQLRRA                                               
Sbjct: 1   MFRAAAPGQLRRA----------------------------------------------- 13

Query: 61  DKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 120
             VAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL
Sbjct: 14  --VAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLILATQKQFNYTHICAGASAFGKNLL 71

Query: 121 PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 180
           PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG
Sbjct: 72  PRVAAKLEVAPISDIIAIKSPDTFVRTIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSG 131

Query: 181 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 240
           GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ
Sbjct: 132 GSASSEKASSTSPVEISEWLDQKLTKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQ 191

Query: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 300
           LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN
Sbjct: 192 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAIN 251

Query: 301 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 333
           KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK
Sbjct: 252 KDPEAPIFQVADYGIVADLFKVVPEMTEILKKK 284


>gi|150170699 kinesin family member 26A [Homo sapiens]
          Length = 1882

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 170 GTSFDAAATSGGSASSEKASSTSPVEISEWLDQKLTKSDRPE-LTGAKVVVSGGR 223
           GT   A+   G S       +  P +   W DQ+   S  PE L   K  VSGGR
Sbjct: 891 GTPMAASTPRGSSGPDTHQGTPEPCKAIVWGDQREDSSAWPELLVPEKAAVSGGR 945


>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
           sapiens]
          Length = 870

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)

Query: 220 SGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQT 266
           +GG G ++        DLA  L   +G     +D GF P D   GQ+
Sbjct: 38  AGGEGGRAQPGLPCSVDLATGLEGPLGGPAVDLDVGFSPGDDIAGQS 84


>gi|13027640 aminoadipate-semialdehyde synthase [Homo sapiens]
          Length = 926

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 17/56 (30%), Positives = 27/56 (48%)

Query: 41  ITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKGLLPEELTPLI 96
           IT  + +  ++  L      + V+ D+CK       LVA+ D+   LLP  L PL+
Sbjct: 507 ITVGSDMKNQIEQLGKKYNINPVSMDICKQEEKLGFLVAKQDLVISLLPYVLHPLV 562


>gi|239755008 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 253

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 18/83 (21%)

Query: 241 LHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGMKDSKTI---V 297
           LHA   A R  VD              K V PE     G++ A +H+AG+ +   I   V
Sbjct: 68  LHALAEARRVVVD--------------KRVHPERDAEAGVAQAAEHVAGVGEFDLIEVEV 113

Query: 298 AINKDPEAPIFQVADYGIV-ADL 319
           AI++      FQVA   +V ADL
Sbjct: 114 AISRCVHVVDFQVAAVEVVQADL 136


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,107,290
Number of Sequences: 37866
Number of extensions: 432487
Number of successful extensions: 1103
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 7
length of query: 333
length of database: 18,247,518
effective HSP length: 103
effective length of query: 230
effective length of database: 14,347,320
effective search space: 3299883600
effective search space used: 3299883600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.