Search of human proteins with 4502991

Search of human proteins with 4502991

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo
sapiens]
         (80 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo sap...   168   7e-43
gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit ...   138   1e-33
gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit ...   138   1e-33
gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]        130   2e-31
gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit ...   117   2e-27
gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo ...   117   2e-27
gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo ...   117   2e-27
gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens]         27   3.5  
gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens]         27   3.5  
gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens]         27   3.5  
gi|154090979 hypothetical protein LOC57481 [Homo sapiens]              26   6.0  

>gi|4502991 cytochrome c oxidase subunit VIIb precursor [Homo
          sapiens]
          Length = 80

 Score =  168 bits (426), Expect = 7e-43
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
          MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV
Sbjct: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60

Query: 61 GIEWNLSPVGRVTPKEWRNQ 80
          GIEWNLSPVGRVTPKEWRNQ
Sbjct: 61 GIEWNLSPVGRVTPKEWRNQ 80


>gi|239747330 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  138 bits (347), Expect = 1e-33
 Identities = 64/80 (80%), Positives = 71/80 (88%)

Query: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
          MFPLV++ L+ LQV+SI QT+ARQSHQK TPDFHDKY NAVLASGATF I  WTYVATQ+
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 61 GIEWNLSPVGRVTPKEWRNQ 80
          GIEWNLSP GRVTPKEWR+Q
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|239741155 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  138 bits (347), Expect = 1e-33
 Identities = 64/80 (80%), Positives = 71/80 (88%)

Query: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
          MFPLV++ L+ LQV+SI QT+ARQSHQK TPDFHDKY NAVLASGATF I  WTYVATQ+
Sbjct: 1  MFPLVENTLSHLQVQSILQTIARQSHQKHTPDFHDKYSNAVLASGATFSIAVWTYVATQI 60

Query: 61 GIEWNLSPVGRVTPKEWRNQ 80
          GIEWNLSP GRVTPKEWR+Q
Sbjct: 61 GIEWNLSPDGRVTPKEWRDQ 80


>gi|115527068 cytochrome c oxidase subunit VIIb2 [Homo sapiens]
          Length = 81

 Score =  130 bits (328), Expect = 2e-31
 Identities = 56/80 (70%), Positives = 69/80 (86%)

Query: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
          MFPL ++AL+ L+++SI Q+MAR SH K +PDFHDKYGNAVLASG  FC+ TW + ATQ+
Sbjct: 2  MFPLARNALSSLKIQSILQSMARHSHVKHSPDFHDKYGNAVLASGTAFCVATWVFTATQI 61

Query: 61 GIEWNLSPVGRVTPKEWRNQ 80
          GIEWNLSPVGRVTPKEW++Q
Sbjct: 62 GIEWNLSPVGRVTPKEWKHQ 81


>gi|239752959 PREDICTED: similar to cytochrome c oxidase subunit
          VIIb [Homo sapiens]
          Length = 80

 Score =  117 bits (293), Expect = 2e-27
 Identities = 58/80 (72%), Positives = 65/80 (81%)

Query: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
          MFPLVK++L+ L V SI QTMARQSHQKR  DFHDK GNAVLASG T CI  WTYVATQ+
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 GIEWNLSPVGRVTPKEWRNQ 80
           I+ NLS VGRVT K+WR+Q
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239747504 PREDICTED: hypothetical protein XP_002347657 [Homo
          sapiens]
          Length = 80

 Score =  117 bits (293), Expect = 2e-27
 Identities = 58/80 (72%), Positives = 65/80 (81%)

Query: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
          MFPLVK++L+ L V SI QTMARQSHQKR  DFHDK GNAVLASG T CI  WTYVATQ+
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 GIEWNLSPVGRVTPKEWRNQ 80
           I+ NLS VGRVT K+WR+Q
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|239741382 PREDICTED: hypothetical protein XP_002342160 [Homo
          sapiens]
          Length = 80

 Score =  117 bits (293), Expect = 2e-27
 Identities = 58/80 (72%), Positives = 65/80 (81%)

Query: 1  MFPLVKSALNRLQVRSIQQTMARQSHQKRTPDFHDKYGNAVLASGATFCIVTWTYVATQV 60
          MFPLVK++L+ L V SI QTMARQSHQKR  DFHDK GNAVLASG T CI  WTYVATQ+
Sbjct: 1  MFPLVKNSLSHLHVPSIWQTMARQSHQKRISDFHDKDGNAVLASGDTICIAVWTYVATQI 60

Query: 61 GIEWNLSPVGRVTPKEWRNQ 80
           I+ NLS VGRVT K+WR+Q
Sbjct: 61 TIKGNLSTVGRVTLKKWRDQ 80


>gi|237757346 DDHD domain containing 1 isoform c [Homo sapiens]
          Length = 900

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 14  VRSIQQTMAR--QSHQKRTPDFHDKYGNAVLASGATFCIVTW 53
           V+ +QQ + R       R PDF +K G   + S +  C++T+
Sbjct: 503 VKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVITY 544


>gi|237757344 DDHD domain containing 1 isoform b [Homo sapiens]
          Length = 879

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 14  VRSIQQTMAR--QSHQKRTPDFHDKYGNAVLASGATFCIVTW 53
           V+ +QQ + R       R PDF +K G   + S +  C++T+
Sbjct: 510 VKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVITY 551


>gi|237757342 DDHD domain containing 1 isoform a [Homo sapiens]
          Length = 872

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 14  VRSIQQTMAR--QSHQKRTPDFHDKYGNAVLASGATFCIVTW 53
           V+ +QQ + R       R PDF +K G   + S +  C++T+
Sbjct: 503 VKGLQQELNRLYSLFCSRNPDFEEKGGKVSIVSHSLGCVITY 544


>gi|154090979 hypothetical protein LOC57481 [Homo sapiens]
          Length = 1709

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)

Query: 63   EWNLSPVGRVTPKEWRN 79
            E  +SPV   +PKEWRN
Sbjct: 1307 EQKVSPVSASSPKEWRN 1323


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.130    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,877,901
Number of Sequences: 37866
Number of extensions: 90013
Number of successful extensions: 164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 153
Number of HSP's gapped (non-prelim): 11
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.