Search of human proteins with 4502473

Search of human proteins with 4502473

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502473 B-cell translocation protein 1 [Homo sapiens]
         (171 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502473 B-cell translocation protein 1 [Homo sapiens]              348   2e-96
gi|5802988 B-cell translocation gene 2 [Homo sapiens]                 211   2e-55
gi|5032187 transducer of ERBB2, 1 [Homo sapiens]                      111   3e-25
gi|7706739 transducer of ERBB2, 2 [Homo sapiens]                      110   5e-25
gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens]       91   6e-19
gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens]      86   1e-17
gi|8923958 B-cell translocation gene 4 [Homo sapiens]                  83   1e-16
gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]      30   1.3  
gi|122937400 odz, odd Oz/ten-m homolog 3 [Homo sapiens]                28   3.9  

>gi|4502473 B-cell translocation protein 1 [Homo sapiens]
          Length = 171

 Score =  348 bits (892), Expect = 2e-96
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK 60
           MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK
Sbjct: 1   MHPFYTRAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEK 60

Query: 61  PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS 120
           PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS
Sbjct: 61  PCKGSGYRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGS 120

Query: 121 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG 171
           ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG
Sbjct: 121 ICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVSG 171


>gi|5802988 B-cell translocation gene 2 [Homo sapiens]
          Length = 158

 Score =  211 bits (537), Expect = 2e-55
 Identities = 103/164 (62%), Positives = 122/164 (74%), Gaps = 10/164 (6%)

Query: 7   RAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSG 66
           +   M+ EIAAAV F+S  LRT+G  SE++L+ FS +LQE L EHYKHHWFPEKP KGSG
Sbjct: 5   KGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSG 64

Query: 67  YRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLYE 126
           YRCIRINHKMDP+I + A +IGLS  +L +LLPSELTLWVDPYEVSYRIGEDGSICVLYE
Sbjct: 65  YRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSICVLYE 124

Query: 127 ASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVS 170
            +P   S             ++CK ++LLGR+SPSKNY M   S
Sbjct: 125 EAPLAASC----------GLLTCKNQVLLGRSSPSKNYVMAVSS 158


>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
          Length = 345

 Score =  111 bits (278), Expect = 3e-25
 Identities = 52/112 (46%), Positives = 76/112 (67%), Gaps = 2/112 (1%)

Query: 14  EIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCIRIN 73
           EI  A++FI  +L  K     R++  F + L+ LL + Y+ HW+PEKP KGSG+RCI I 
Sbjct: 4   EIQVALNFIISYLYNK--LPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIG 61

Query: 74  HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLY 125
            K+DP+I QA++  GL   ++   LP +L++W+DP+EVSY+IGE G + VLY
Sbjct: 62  EKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLY 113


>gi|7706739 transducer of ERBB2, 2 [Homo sapiens]
          Length = 344

 Score =  110 bits (276), Expect = 5e-25
 Identities = 50/112 (44%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 14  EIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCIRIN 73
           EI  A++FI  +L  K     R+   F + L+ LL + Y+ HW+PEKP KGSG+RC+ I 
Sbjct: 4   EIKVALNFIISYLYNK--LPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHIG 61

Query: 74  HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLY 125
             +DP++  AA+R GL+ +++   +P EL++W+DP+EVSY+IGE G++ VLY
Sbjct: 62  EMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVKVLY 113


>gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens]
          Length = 252

 Score = 90.5 bits (223), Expect = 6e-19
 Identities = 47/116 (40%), Positives = 69/116 (59%), Gaps = 4/116 (3%)

Query: 11  MIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCI 70
           M  EIAA V F ++ +R      +  ++ F++ L  +L E YK+HW+PEKP KG  YRCI
Sbjct: 1   MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60

Query: 71  RIN--HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVL 124
           R+N   ++DP + +A +   +   +L   LP ELTLWVDP EV  R GE  +  ++
Sbjct: 61  RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCRYGEKNNAFIV 114


>gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens]
          Length = 296

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 4/106 (3%)

Query: 11  MIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCI 70
           M  EIAA V F ++ +R      +  ++ F++ L  +L E YK+HW+PEKP KG  YRCI
Sbjct: 1   MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60

Query: 71  RIN--HKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYR 114
           R+N   ++DP + +A +   +   +L   LP ELTLWVDP EV  R
Sbjct: 61  RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCR 104


>gi|8923958 B-cell translocation gene 4 [Homo sapiens]
          Length = 223

 Score = 82.8 bits (203), Expect = 1e-16
 Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 4/109 (3%)

Query: 11  MIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSGYRCI 70
           M  EIA  V F+++ ++     S++Q++ F++ L  +L E Y+ HW  + P KG  +RCI
Sbjct: 1   MRDEIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMTILFETYRSHWHSDCPSKGQAFRCI 60

Query: 71  RINHKM--DPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGE 117
           RIN+    DP++ +A     +    L   LP E+T+WVDP+EV  R GE
Sbjct: 61  RINNNQNKDPILERACVESNVDFSHLG--LPKEMTIWVDPFEVCCRYGE 107


>gi|194440727 dynein heavy chain domain 2 isoform 1 [Homo sapiens]
          Length = 3092

 Score = 29.6 bits (65), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 94   LFRLLPSELTLWVDPYEVSYRIGEDGSICVLYEASPAGG---STQNSTN 139
            LF L+P    +W+ P + S  I  D  +C LY+ S   G   +T +STN
Sbjct: 3018 LFDLMP---IIWIKPTQKSRIIKSDAYVCPLYKTSERKGTLSTTGHSTN 3063


>gi|122937400 odz, odd Oz/ten-m homolog 3 [Homo sapiens]
          Length = 2699

 Score = 28.1 bits (61), Expect = 3.9
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 14/74 (18%)

Query: 98   LPSELTLWVDPYEVSYRIGEDGSICVLYEASPAGGSTQNSTNVQMVDSRISCKEELLLGR 157
            + S  T+  D    SY+IG DGS+ ++Y +               +DS    +  +L G 
Sbjct: 1681 IDSFYTMVQDQLRNSYQIGYDGSLRIIYASG--------------LDSHYQTEPHVLAGT 1726

Query: 158  TSPSKNYNMMTVSG 171
             +P+     MT+ G
Sbjct: 1727 ANPTVAKRNMTLPG 1740


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,321,477
Number of Sequences: 37866
Number of extensions: 253181
Number of successful extensions: 554
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 543
Number of HSP's gapped (non-prelim): 9
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.