Search of human proteins with 4502165

Search of human proteins with 4502165

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502165 apolipoprotein F precursor [Homo sapiens]
         (326 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502165 apolipoprotein F precursor [Homo sapiens]                  648   0.0  
gi|54607091 SUMO1/sentrin/SMT3 specific protease 2 [Homo sapiens]      32   1.0  
gi|32306536 mitochondrial translational initiation factor 3 [Hom...    30   3.8  
gi|7706671 peroxisomal biogenesis factor 5-like [Homo sapiens]         30   3.8  

>gi|4502165 apolipoprotein F precursor [Homo sapiens]
          Length = 326

 Score =  648 bits (1671), Expect = 0.0
 Identities = 326/326 (100%), Positives = 326/326 (100%)

Query: 1   MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS 60
           MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS
Sbjct: 1   MTGLCGYSAPDMRGLRLIMIPVELLLCYLLLHPVDATSYGKQTNVLMHFPLSLESQTPSS 60

Query: 61  DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT 120
           DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT
Sbjct: 61  DPLSCQFLHPKSLPGFSHMAPLPKFLVSLALRNALEEAGCQADVWALQLQLYRQGGVNAT 120

Query: 121 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH 180
           QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH
Sbjct: 121 QVLIQHLRGLQKGRSTERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVH 180

Query: 181 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA 240
           NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA
Sbjct: 181 NVVQLLPGVGTFYNLGTALYYATQNCLGKARERGRDGAIDLGYDLLMTMAGMSGGPMGLA 240

Query: 241 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV 300
           ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV
Sbjct: 241 ISAALKPALRSGVQQLIQYYQDQKDANISQPETTKEGLRAISDVSDLEETTTLASFISEV 300

Query: 301 VSSAPYWGWAIIKSYDLDPGAGSLEI 326
           VSSAPYWGWAIIKSYDLDPGAGSLEI
Sbjct: 301 VSSAPYWGWAIIKSYDLDPGAGSLEI 326


>gi|54607091 SUMO1/sentrin/SMT3 specific protease 2 [Homo sapiens]
          Length = 589

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 204 QNCLGKARERGRDGAIDLGYDLLMTMAGMSG-GPMGLAISAALKPALRSGVQQLIQYYQD 262
           +NC GK R+R  D  ++L  D+   ++   G GP    +S+A K  +  G  Q ++ Y  
Sbjct: 351 KNCSGKERDRRTDDLLELTEDMEKEISNALGHGPQDEILSSAFKLRITRGDIQTLKNYHW 410

Query: 263 QKDANIS 269
             D  I+
Sbjct: 411 LNDEVIN 417


>gi|32306536 mitochondrial translational initiation factor 3 [Homo
           sapiens]
          Length = 278

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 172 ENEKEQAVHNVVQLLPGVGTF 192
           ENE E+  H ++Q +PG+ TF
Sbjct: 203 ENEMEEIFHQILQTMPGIATF 223


>gi|7706671 peroxisomal biogenesis factor 5-like [Homo sapiens]
          Length = 626

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 135 STERNVSVEALASALQLLAREQQSTGRVGRSLPTEDCENEKEQAVHNVVQLLPG-VGTFY 193
           S E N +++A  +AL +   +     R+G +L   D   E  +A    +++ PG + + Y
Sbjct: 487 SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRY 546

Query: 194 NLG 196
           NLG
Sbjct: 547 NLG 549


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,048,480
Number of Sequences: 37866
Number of extensions: 511634
Number of successful extensions: 1444
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1441
Number of HSP's gapped (non-prelim): 5
length of query: 326
length of database: 18,247,518
effective HSP length: 103
effective length of query: 223
effective length of database: 14,347,320
effective search space: 3199452360
effective search space used: 3199452360
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.