Search of human proteins with 42734434

Search of human proteins with 42734434

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42734434 transmembrane protein 53 [Homo sapiens]
         (277 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42734434 transmembrane protein 53 [Homo sapiens]                   557   e-159
gi|9910460 nitrilase family, member 2 [Homo sapiens]                   33   0.36 
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ...    31   1.4  
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s...    31   1.4  
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa...    31   1.4  

>gi|42734434 transmembrane protein 53 [Homo sapiens]
          Length = 277

 Score =  557 bits (1435), Expect = e-159
 Identities = 277/277 (100%), Positives = 277/277 (100%)

Query: 1   MASAELDYTIEIPDQPCWSQKNSPSPGGKEAETRQPVVILLGWGGCKDKNLAKYSAIYHK 60
           MASAELDYTIEIPDQPCWSQKNSPSPGGKEAETRQPVVILLGWGGCKDKNLAKYSAIYHK
Sbjct: 1   MASAELDYTIEIPDQPCWSQKNSPSPGGKEAETRQPVVILLGWGGCKDKNLAKYSAIYHK 60

Query: 61  RGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNGGVMLY 120
           RGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNGGVMLY
Sbjct: 61  RGCIVIRYTAPWHMVFFSESLGIPSLRVLAQKLLELLFDYEIEKEPLLFHVFSNGGVMLY 120

Query: 121 RYVLELLQTRRFCRLRVVGTIFDSAPGDSNLVGALRALAAILERRAAMLRLLLLVAFALV 180
           RYVLELLQTRRFCRLRVVGTIFDSAPGDSNLVGALRALAAILERRAAMLRLLLLVAFALV
Sbjct: 121 RYVLELLQTRRFCRLRVVGTIFDSAPGDSNLVGALRALAAILERRAAMLRLLLLVAFALV 180

Query: 181 VVLFHVLLAPITALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDIERMVEARLARRV 240
           VVLFHVLLAPITALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDIERMVEARLARRV
Sbjct: 181 VVLFHVLLAPITALFHTHFYDRLQDAGSRWPELYLYSRADEVVLARDIERMVEARLARRV 240

Query: 241 LARSVDFVSSAHVSHLRDYPTYYTSLCVDFMRNCVRC 277
           LARSVDFVSSAHVSHLRDYPTYYTSLCVDFMRNCVRC
Sbjct: 241 LARSVDFVSSAHVSHLRDYPTYYTSLCVDFMRNCVRC 277


>gi|9910460 nitrilase family, member 2 [Homo sapiens]
          Length = 276

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 8   YTIEIPDQPCWSQKNSPSPGGKEAETRQPVVILLGWGGCKDKNLAKYSAIYHKRGCIVIR 67
           + I++P +  + +  + SPG   +    P    +G G C D   A+ + IY +RGC ++ 
Sbjct: 116 FDIDVPGKITFQESKTLSPGDSFSTFDTPYC-RVGLGICYDMRFAELAQIYAQRGCQLLV 174

Query: 68  YTAPWHM 74
           Y   +++
Sbjct: 175 YPGAFNL 181


>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
           sapiens]
          Length = 1188

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 45  GCKDKNLAK-YSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLA 90
           G KD NL K +  +YH+ GC  I   A W  ++    LGIP L   A
Sbjct: 337 GYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYM--DLGIPILNSAA 381


>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
           sapiens]
          Length = 1203

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 45  GCKDKNLAK-YSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLA 90
           G KD NL K +  +YH+ GC  I   A W  ++    LGIP L   A
Sbjct: 337 GYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYM--DLGIPILNSAA 381


>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
           sapiens]
          Length = 1257

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 45  GCKDKNLAK-YSAIYHKRGCIVIRYTAPWHMVFFSESLGIPSLRVLA 90
           G KD NL K +  +YH+ GC  I   A W  ++    LGIP L   A
Sbjct: 337 GYKDLNLFKLFRLVYHQGGCDNIDSGAVWKQIYM--DLGIPILNSAA 381


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.141    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,704,515
Number of Sequences: 37866
Number of extensions: 383102
Number of successful extensions: 1088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1087
Number of HSP's gapped (non-prelim): 5
length of query: 277
length of database: 18,247,518
effective HSP length: 101
effective length of query: 176
effective length of database: 14,423,052
effective search space: 2538457152
effective search space used: 2538457152
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.