Search of human proteins with 42544136

Search of human proteins with 42544136

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42544136 ribonucleotide reductase M2 B (TP53 inducible)
[Homo sapiens]
         (351 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42544136 ribonucleotide reductase M2 B (TP53 inducible) [Homo...   706   0.0  
gi|4557845 ribonucleotide reductase M2 polypeptide [Homo sapiens]     564   e-161
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       32   1.1  
gi|57863275 vacuolar protein sorting 8 homolog isoform b [Homo s...    30   3.2  
gi|57863277 vacuolar protein sorting 8 homolog isoform a [Homo s...    30   3.2  
gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]    29   5.5  
gi|40805106 fucosyltransferase 10 [Homo sapiens]                       29   7.2  

>gi|42544136 ribonucleotide reductase M2 B (TP53 inducible) [Homo
           sapiens]
          Length = 351

 Score =  706 bits (1821), Expect = 0.0
 Identities = 351/351 (100%), Positives = 351/351 (100%)

Query: 1   MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ 60
           MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ
Sbjct: 1   MGDPERPEAAGLDQDERSSSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQ 60

Query: 61  ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA 120
           ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA
Sbjct: 61  ASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEA 120

Query: 121 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK 180
           RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK
Sbjct: 121 RCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRK 180

Query: 181 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ 240
           STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ
Sbjct: 181 STFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQ 240

Query: 241 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS 300
           YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS
Sbjct: 241 YLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFS 300

Query: 301 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351
           KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF
Sbjct: 301 KVFQAENPFDFMENISLEGKTNFFEKRVSEYQRFAVMAETTDNVFTLDADF 351


>gi|4557845 ribonucleotide reductase M2 polypeptide [Homo sapiens]
          Length = 389

 Score =  564 bits (1454), Expect = e-161
 Identities = 269/321 (83%), Positives = 302/321 (94%)

Query: 31  EEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFIS 90
           +EPLLR++ RRFVIFPI+Y DIW+MYK+A+ASFWTAEEVDLSKD+ HW  LK +E+YFIS
Sbjct: 69  DEPLLRENPRRFVIFPIEYHDIWQMYKKAEASFWTAEEVDLSKDIQHWESLKPEERYFIS 128

Query: 91  HILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPK 150
           H+LAFFAASDGIVNENLVERFSQEVQ+ EARCFYGFQI +EN+HSEMYSLLIDTYI+DPK
Sbjct: 129 HVLAFFAASDGIVNENLVERFSQEVQITEARCFYGFQIAMENIHSEMYSLLIDTYIKDPK 188

Query: 151 KREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKK 210
           +REFLFNAIETMP VKKKADWALRWI D+++T+GERVVAFAAVEG+FFSGSFA+IFWLKK
Sbjct: 189 EREFLFNAIETMPCVKKKADWALRWIGDKEATYGERVVAFAAVEGIFFSGSFASIFWLKK 248

Query: 211 RGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEAL 270
           RGLMPGLTFSNELISRDEGLHCDFACLMF++LV+KPSEERVREII++AV+IEQEFLTEAL
Sbjct: 249 RGLMPGLTFSNELISRDEGLHCDFACLMFKHLVHKPSEERVREIIINAVRIEQEFLTEAL 308

Query: 271 PVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTNFFEKRVSE 330
           PV LIGMNC LMKQYIEFVADRL++ELGFSKVF+ ENPFDFMENISLEGKTNFFEKRV E
Sbjct: 309 PVKLIGMNCTLMKQYIEFVADRLMLELGFSKVFRVENPFDFMENISLEGKTNFFEKRVGE 368

Query: 331 YQRFAVMAETTDNVFTLDADF 351
           YQR  VM+  T+N FTLDADF
Sbjct: 369 YQRMGVMSSPTENSFTLDADF 389


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 5    ERPEAAGLDQDERSSSDTNESEIKSNEEP 33
            E+PE AG + +ER  ++T+++E +S +EP
Sbjct: 4913 EKPEEAGHEAEERGETETDQNESQSPQEP 4941


>gi|57863275 vacuolar protein sorting 8 homolog isoform b [Homo
           sapiens]
          Length = 1426

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 112 SQEVQVPEARCFYGF-QILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETM 162
           S+ +++ E   FY   + + E  H   Y  +ID Y+RDP + E +FN I  +
Sbjct: 892 SRLIRMAEKAEFYQICEFMYEREHQ--YDKIIDCYLRDPLREEEVFNYIHNI 941


>gi|57863277 vacuolar protein sorting 8 homolog isoform a [Homo
           sapiens]
          Length = 1428

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 112 SQEVQVPEARCFYGF-QILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETM 162
           S+ +++ E   FY   + + E  H   Y  +ID Y+RDP + E +FN I  +
Sbjct: 894 SRLIRMAEKAEFYQICEFMYEREHQ--YDKIIDCYLRDPLREEEVFNYIHNI 943


>gi|21070997 stromal interaction molecule 1 precursor [Homo sapiens]
          Length = 685

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 12  LDQDERSSSDTNESEIKSNEE-----PLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTA 66
           +D D     D  ES+    E+     P ++ S+       I   D+WK +K ++   WT 
Sbjct: 75  MDDDANGDVDVEESDEFLREDLNYHDPTVKHSTFHGEDKLISVEDLWKAWKSSEVYNWTV 134

Query: 67  EEV 69
           +EV
Sbjct: 135 DEV 137


>gi|40805106 fucosyltransferase 10 [Homo sapiens]
          Length = 479

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 12/56 (21%)

Query: 143 DTYIRDPKKREFLFNAIETMPYVKKKADW------------ALRWIADRKSTFGER 186
           DT++  P+   F F+ + T P    +  W            ALRW+ DR   F  +
Sbjct: 415 DTHLSCPEPTVFAFSPLRTPPLSSLREMWISSFEQSKKEAQALRWLVDRNQNFSSQ 470


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,079,458
Number of Sequences: 37866
Number of extensions: 492357
Number of successful extensions: 1122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1118
Number of HSP's gapped (non-prelim): 7
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.