Search of human proteins with 42544127

Search of human proteins with 42544127

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42544127 splicing factor 1 isoform 4 [Homo sapiens]
         (80 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42544127 splicing factor 1 isoform 4 [Homo sapiens]                168   7e-43
gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]                112   5e-26
gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]                112   5e-26
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]                112   5e-26
gi|21687032 hypothetical protein LOC122258 [Homo sapiens]              28   2.1  

>gi|42544127 splicing factor 1 isoform 4 [Homo sapiens]
          Length = 80

 Score =  168 bits (426), Expect = 7e-43
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI 60
          MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI
Sbjct: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI 60

Query: 61 QMHFEIVTIYSEQDLHFLKV 80
          QMHFEIVTIYSEQDLHFLKV
Sbjct: 61 QMHFEIVTIYSEQDLHFLKV 80


>gi|42544123 splicing factor 1 isoform 3 [Homo sapiens]
          Length = 548

 Score =  112 bits (281), Expect = 5e-26
 Identities = 56/68 (82%), Positives = 59/68 (86%), Gaps = 6/68 (8%)

Query: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI 60
          MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYI      +
Sbjct: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYI------V 54

Query: 61 QMHFEIVT 68
          Q+  E +T
Sbjct: 55 QLQIEDLT 62


>gi|42544125 splicing factor 1 isoform 2 [Homo sapiens]
          Length = 638

 Score =  112 bits (281), Expect = 5e-26
 Identities = 56/68 (82%), Positives = 59/68 (86%), Gaps = 6/68 (8%)

Query: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI 60
          MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYI      +
Sbjct: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYI------V 54

Query: 61 QMHFEIVT 68
          Q+  E +T
Sbjct: 55 QLQIEDLT 62


>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
          Length = 639

 Score =  112 bits (281), Expect = 5e-26
 Identities = 56/68 (82%), Positives = 59/68 (86%), Gaps = 6/68 (8%)

Query: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYIGKYTFCI 60
          MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYI      +
Sbjct: 1  MATGANATPLDFPSKKRKRSRWNQDTMEQKTVIPGMPTVIPPGLTREQERAYI------V 54

Query: 61 QMHFEIVT 68
          Q+  E +T
Sbjct: 55 QLQIEDLT 62


>gi|21687032 hypothetical protein LOC122258 [Homo sapiens]
          Length = 195

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 22 WNQDTMEQKTVIPGMPTVIP 41
          W +  +  +TVIPG PT IP
Sbjct: 19 WQETELRPRTVIPGSPTEIP 38


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,345,566
Number of Sequences: 37866
Number of extensions: 130984
Number of successful extensions: 302
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 297
Number of HSP's gapped (non-prelim): 5
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.