Search of human proteins with 41462397

Search of human proteins with 41462397

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41462397 RAN guanine nucleotide release factor [Homo
sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41462397 RAN guanine nucleotide release factor [Homo sapiens]      379   e-106
gi|148612870 chromodomain helicase DNA binding protein 1-like [H...    29   2.0  
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [...    29   2.7  
gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens]    29   2.7  
gi|20070252 interleukin 1 family, member 8 isoform 1 [Homo sapiens]    29   2.7  
gi|153945755 zinc finger protein 608 [Homo sapiens]                    28   5.9  
gi|90093355 jumonji C domain containing histone demethylase 1 ho...    27   7.8  
gi|11342664 myxovirus resistance protein 2 [Homo sapiens]              27   7.8  

>gi|41462397 RAN guanine nucleotide release factor [Homo sapiens]
          Length = 186

 Score =  379 bits (974), Expect = e-106
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 60
           MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG
Sbjct: 1   MEPTRDCPLFGGAFSAILPMGAIDVSDLRPVPDNQEVFCHPVTDQSLIVELLELQAHVRG 60

Query: 61  EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAK 120
           EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAK
Sbjct: 61  EAAARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIAKENQQVAK 120

Query: 121 DVTLHQALLRLPQYQTDLLLTFNQPPPDNRSSLGPENLSPAPWSLGDFEQLVTSLTLHDP 180
           DVTLHQALLRLPQYQTDLLLTFNQPPPDNRSSLGPENLSPAPWSLGDFEQLVTSLTLHDP
Sbjct: 121 DVTLHQALLRLPQYQTDLLLTFNQPPPDNRSSLGPENLSPAPWSLGDFEQLVTSLTLHDP 180

Query: 181 NIFGPQ 186
           NIFGPQ
Sbjct: 181 NIFGPQ 186


>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
           sapiens]
          Length = 897

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 54  LQAHVRGEA-AARYHFEDVGGVQGARAVHVESVQPLSLENLALRGRCQEAWVLSGKQQIA 112
           L+ H  G A AAR   +D+    G   +H+ S Q   +  LA R  CQ   +L  +  + 
Sbjct: 18  LRLHTEGRAEAARVQEQDLRQ-WGLTGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLG 76

Query: 113 KENQQVA 119
           K  Q +A
Sbjct: 77  KTCQTIA 83


>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
            sapiens]
          Length = 1584

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 145  PPPDNRSSLGPENLSPAPWSLGD 167
            PPP  +    P NL PAP SLGD
Sbjct: 1419 PPPPQQPLPPPPNLEPAPPSLGD 1441


>gi|27894313 interleukin 1 family, member 8 isoform 2 [Homo sapiens]
          Length = 157

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 91  ENLALRGRCQEAWVLSGKQQIAKENQQVAKDVTLH 125
           ++ A+R   Q  WVLSG   IA    +  K VTLH
Sbjct: 10  KSYAIRDSRQMVWVLSGNSLIAAPLSRSIKPVTLH 44


>gi|20070252 interleukin 1 family, member 8 isoform 1 [Homo sapiens]
          Length = 164

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 91  ENLALRGRCQEAWVLSGKQQIAKENQQVAKDVTLH 125
           ++ A+R   Q  WVLSG   IA    +  K VTLH
Sbjct: 10  KSYAIRDSRQMVWVLSGNSLIAAPLSRSIKPVTLH 44


>gi|153945755 zinc finger protein 608 [Homo sapiens]
          Length = 1512

 Score = 27.7 bits (60), Expect = 5.9
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 105 LSGKQQIAKENQQVAKDVTLHQALLRLPQYQTDLLLTFNQPPPDNRSSLGPENL 158
           L G   + K+ ++  +    H+ + +L   + D L T   PPP   SSL P+ L
Sbjct: 275 LMGNSMLVKKEEEEEES---HRRIKKLKTEKVDPLFTVPAPPPPISSSLTPQIL 325


>gi|90093355 jumonji C domain containing histone demethylase 1
           homolog D [Homo sapiens]
          Length = 941

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 15  SAILPMGAIDVSDLRPVPDNQEVFC---HPVTDQSLIVELLELQAHVRGEAAARYHFEDV 71
           S+ +P      +DLR +  N  +      P  DQSL     E +   R    A+   E+ 
Sbjct: 564 SSTVPEWRAKDNDLRLLLTNGRIIKDERQPFADQSLYTADSENEEDKRRTKKAKMKIEES 623

Query: 72  GGVQGARAVHVESVQPLS 89
            GV+G    H ES +PL+
Sbjct: 624 SGVEGVE--HEESQKPLN 639


>gi|11342664 myxovirus resistance protein 2 [Homo sapiens]
          Length = 715

 Score = 27.3 bits (59), Expect = 7.8
 Identities = 12/18 (66%), Positives = 14/18 (77%), Gaps = 3/18 (16%)

Query: 143 NQPPPDNRS---SLGPEN 157
           NQPPP NRS   ++GPEN
Sbjct: 70  NQPPPGNRSQPRAMGPEN 87


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,716,782
Number of Sequences: 37866
Number of extensions: 338156
Number of successful extensions: 772
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 8
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.