Search of human proteins with 41281688

Search of human proteins with 41281688

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41281688 hypothetical protein LOC25912 isoform 2 [Homo
sapiens]
         (201 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41281688 hypothetical protein LOC25912 isoform 2 [Homo sapiens]    397   e-111
gi|14149688 hypothetical protein LOC25912 isoform 1 [Homo sapiens]    384   e-107
gi|148833486 hypothetical protein LOC25912 isoform 3 [Homo sapiens]   367   e-102
gi|90903231 huntingtin [Homo sapiens]                                  36   0.019
gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo...    32   0.28 
gi|169207756 PREDICTED: hypothetical protein [Homo sapiens]            30   1.8  
gi|169207046 PREDICTED: hypothetical protein [Homo sapiens]            30   1.8  
gi|169207319 PREDICTED: hypothetical protein [Homo sapiens]            29   2.4  
gi|126723295 retinoic acid early transcript 1L [Homo sapiens]          29   2.4  
gi|169167744 PREDICTED: similar to hCG1641913 [Homo sapiens]           29   3.1  
gi|239748517 PREDICTED: similar to hCG1641913 [Homo sapiens]           29   3.1  
gi|169167587 PREDICTED: similar to hCG1641913 [Homo sapiens]           29   3.1  
gi|224586880 Ras protein-specific guanine nucleotide-releasing f...    28   6.9  
gi|24797099 Ras protein-specific guanine nucleotide-releasing fa...    28   6.9  
gi|24797101 Ras protein-specific guanine nucleotide-releasing fa...    28   6.9  
gi|13376824 UL16 binding protein 2 [Homo sapiens]                      28   6.9  
gi|116734666 molybdenum cofactor synthesis-step 1 protein isofor...    27   9.0  
gi|156546890 WW and C2 domain containing 2 [Homo sapiens]              27   9.0  

>gi|41281688 hypothetical protein LOC25912 isoform 2 [Homo sapiens]
          Length = 201

 Score =  397 bits (1019), Expect = e-111
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60
           MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN
Sbjct: 1   MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60

Query: 61  QKIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFG 120
           QKIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFG
Sbjct: 61  QKIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFG 120

Query: 121 QNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKR 180
           QNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKR
Sbjct: 121 QNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKR 180

Query: 181 AKHFLELKSFKDNYNTLESTL 201
           AKHFLELKSFKDNYNTLESTL
Sbjct: 181 AKHFLELKSFKDNYNTLESTL 201


>gi|14149688 hypothetical protein LOC25912 isoform 1 [Homo sapiens]
          Length = 219

 Score =  384 bits (986), Expect = e-107
 Identities = 200/219 (91%), Positives = 201/219 (91%), Gaps = 18/219 (8%)

Query: 1   MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60
           MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN
Sbjct: 1   MASGSNWLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGN 60

Query: 61  Q------------------KIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI 102
           Q                  +IPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI
Sbjct: 61  QSCYNYLYRMKALDAIRTSEIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALI 120

Query: 103 DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV 162
           DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV
Sbjct: 121 DTLLDGYETARYGTGVFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEV 180

Query: 163 SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 201
           SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL
Sbjct: 181 SPTTIQVTYLPSSQKSKRAKHFLELKSFKDNYNTLESTL 219


>gi|148833486 hypothetical protein LOC25912 isoform 3 [Homo sapiens]
          Length = 253

 Score =  367 bits (941), Expect = e-102
 Identities = 200/253 (79%), Positives = 201/253 (79%), Gaps = 52/253 (20%)

Query: 1   MASGSNWLSGVNVVLVMAYGSL----------------------------------DLKE 26
           MASGSNWLSGVNVVLVMAYGSL                                  DLKE
Sbjct: 1   MASGSNWLSGVNVVLVMAYGSLVFVLLFIFVKRQIMRFAMKSRRGPHVPVGHNAPKDLKE 60

Query: 27  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQ------------------KIPFHSE 68
           EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQ                  +IPFHSE
Sbjct: 61  EIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQSCYNYLYRMKALDAIRTSEIPFHSE 120

Query: 69  GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 128
           GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ
Sbjct: 121 GRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFGQNEYLRYQ 180

Query: 129 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 188
           EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK
Sbjct: 181 EALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHFLELK 240

Query: 189 SFKDNYNTLESTL 201
           SFKDNYNTLESTL
Sbjct: 241 SFKDNYNTLESTL 253


>gi|90903231 huntingtin [Homo sapiens]
          Length = 3144

 Score = 36.2 bits (82), Expect = 0.019
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 7    WLSGVNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQKIPFH 66
            W+SG+  +L +    L  +   DI LSR+Q++ + P L++      L+ +      +  H
Sbjct: 1674 WISGILAILRV----LISQSTEDIVLSRIQELSFSPYLISCTVINRLR-DGDSTSTLEEH 1728

Query: 67   SEGRHPRSLMGKNFRSYLLDL 87
            SEG+  ++L  + F  +LL L
Sbjct: 1729 SEGKQIKNLPEETFSRFLLQL 1749


>gi|5453822 nuclear receptor subfamily 4, group A, member 2 [Homo
           sapiens]
          Length = 598

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 30/117 (25%), Positives = 45/117 (38%), Gaps = 10/117 (8%)

Query: 60  NQKIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVF 119
           +Q   +HS G +    +   F  + +DL NT             T +D Y T       +
Sbjct: 19  SQSYSYHSSGEYSSDFLTPEFVKFSMDLTNTEIT-ATTSLPSFSTFMDNYSTG------Y 71

Query: 120 GQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDL-TQSPEVSPTTIQVTYLPSS 175
                  YQ  LS   +++K  +   Q H+      L  QS E+ P +  V Y PSS
Sbjct: 72  DVKPPCLYQMPLSGQQSSIK--VEDIQMHNYQQHSHLPPQSEEMMPHSGSVYYKPSS 126


>gi|169207756 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 828

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 32  LSRVQDIKYEPQLLADDDARLLQ--LETQGNQKIPFHSEGRHPRSLM--GKNFRSYLLDL 87
           +S ++D+K E Q L D +++  +   ET  N +  F+   +    L+   K  + Y+L L
Sbjct: 611 ISNMEDVKQELQQLRDQESKKNKDHFETLKNLENGFYINDQKADLLLLENKKLKEYILYL 670

Query: 88  RNTSTPFKGVRKALIDTLLD 107
           +N    ++  ++AL+ T  D
Sbjct: 671 KNNIEKYREGQEALMHTSSD 690


>gi|169207046 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 828

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 32  LSRVQDIKYEPQLLADDDARLLQ--LETQGNQKIPFHSEGRHPRSLM--GKNFRSYLLDL 87
           +S ++D+K E Q L D +++  +   ET  N +  F+   +    L+   K  + Y+L L
Sbjct: 611 ISNMEDVKQELQQLRDQESKKNKDHFETLKNLENGFYINDQKADLLLLENKKLKEYILYL 670

Query: 88  RNTSTPFKGVRKALIDTLLD 107
           +N    ++  ++AL+ T  D
Sbjct: 671 KNNIEKYREGQEALMHTSSD 690


>gi|169207319 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 828

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 32  LSRVQDIKYEPQLLADDDARLLQ--LETQGNQKIPFHSEGRHPRSLM--GKNFRSYLLDL 87
           +S ++D+K E Q L D +++  +   ET  N +  F+   +    L+   K  + Y+L L
Sbjct: 611 ISNMEDVKQELQQLRDQESKKNKDHFETLKNLENGFYINDQKADLLLLENKKLKEYILYL 670

Query: 88  RNTSTPFKGVRKALIDTLLD 107
           +N    ++  ++AL+ T  D
Sbjct: 671 KNNIEKYREGQEALMHTSND 690


>gi|126723295 retinoic acid early transcript 1L [Homo sapiens]
          Length = 246

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 11  VNVVLVMAYGSLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQKIPFHSEGR 70
           +NV +     +  L+E +DI   ++ DI+ E       +   LQ      QK   HS G 
Sbjct: 81  LNVTMAWKAQNPVLREVVDILTEQLLDIQLENY--TPKEPLTLQARMSCEQKAEGHSSGS 138

Query: 71  HPRSLMGKNFRSYLLDLRNTSTPFKGVRK 99
              S+ G+ F  +  + R  +T   G RK
Sbjct: 139 WQFSIDGQTFLLFDSEKRMWTTVHPGARK 167


>gi|169167744 PREDICTED: similar to hCG1641913 [Homo sapiens]
          Length = 506

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 118 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 157
           VFG+   L YQEA+  +AT  +   G   + +   A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339


>gi|239748517 PREDICTED: similar to hCG1641913 [Homo sapiens]
          Length = 506

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 118 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 157
           VFG+   L YQEA+  +AT  +   G   + +   A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339


>gi|169167587 PREDICTED: similar to hCG1641913 [Homo sapiens]
          Length = 506

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 118 VFGQNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLT 157
           VFG+   L YQEA+  +AT  +   G   + +   A D+T
Sbjct: 300 VFGEEVDLAYQEAMLNMATINRTAAGLMHKFNAHVATDIT 339


>gi|224586880 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 3 [Homo sapiens]
          Length = 1257

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 130 ALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHF 184
           ALS+ ++ V  R  S    +QS   D   SP  SPTT      P S K+K +  F
Sbjct: 812 ALSKQSSEVSMREESDIDQNQSDDGDTETSPTKSPTT------PKSVKNKNSSEF 860


>gi|24797099 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 1 [Homo sapiens]
          Length = 1273

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 130 ALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHF 184
           ALS+ ++ V  R  S    +QS   D   SP  SPTT      P S K+K +  F
Sbjct: 828 ALSKQSSEVSMREESDIDQNQSDDGDTETSPTKSPTT------PKSVKNKNSSEF 876


>gi|24797101 Ras protein-specific guanine nucleotide-releasing
           factor 1 isoform 2 [Homo sapiens]
          Length = 489

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)

Query: 130 ALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPTTIQVTYLPSSQKSKRAKHF 184
           ALS+ ++ V  R  S    +QS   D   SP  SPTT      P S K+K +  F
Sbjct: 44  ALSKQSSEVSMREESDIDQNQSDDGDTETSPTKSPTT------PKSVKNKNSSEF 92


>gi|13376824 UL16 binding protein 2 [Homo sapiens]
          Length = 246

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)

Query: 24  LKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQKIPFHSEGRHPRSLMGKNFRSY 83
           L+E +DI   +++DI+ E       +   LQ      QK   HS G    S  G+ F  +
Sbjct: 94  LREVVDILTEQLRDIQLENY--TPKEPLTLQARMSCEQKAEGHSSGSWQFSFDGQIFLLF 151

Query: 84  LLDLRNTSTPFKGVRK 99
             + R  +T   G RK
Sbjct: 152 DSEKRMWTTVHPGARK 167


>gi|116734666 molybdenum cofactor synthesis-step 1 protein isoform 3
           [Homo sapiens]
          Length = 620

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 61  QKIPFHSEGRHPRSLMGKNFRSYLLDLRNTSTPFKGVRKALIDTLLDGYETARYGTGVFG 120
           +K+P   E    ++     F+  +  + + S  F G    L  T     +   +G     
Sbjct: 279 EKVP-EEESSTAKAFKIPGFQGQISFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVS 337

Query: 121 QNEYLRYQEALSELATAVKARIGSSQRHHQSAAKDLTQSPEVSPT 165
             ++LR   +  EL   + A +G  +R H         SP  +P+
Sbjct: 338 LRDHLRAGASEQELLRIIGAAVGRKKRQHAELFLMFPNSPPANPS 382


>gi|156546890 WW and C2 domain containing 2 [Homo sapiens]
          Length = 1192

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 21   SLDLKEEIDIRLSRVQDIKYEPQLLADDDARLLQLETQGNQKIP 64
            SLDL+ ++   L+R   +  E Q L D   +L +L+ QG   +P
Sbjct: 1066 SLDLELDLQASLTRQSRLNDELQALRDLRQKLEELKAQGETDLP 1109


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.314    0.130    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,838,233
Number of Sequences: 37866
Number of extensions: 272267
Number of successful extensions: 581
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 19
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.