Search of human proteins with 40806193

Search of human proteins with 40806193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40806193 transmembrane protein 189 isoform 1 [Homo sapiens]
         (270 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40806193 transmembrane protein 189 isoform 1 [Homo sapiens]        583   e-167
gi|241982751 transmembrane protein 189 isoform 2 [Homo sapiens]       572   e-163
gi|40806190 TMEM189-UBE2V1 readthrough transcript [Homo sapiens]      501   e-142
gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]        30   2.2  
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]     30   2.9  
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]     30   2.9  
gi|150378539 piccolo isoform 1 [Homo sapiens]                          28   8.4  

>gi|40806193 transmembrane protein 189 isoform 1 [Homo sapiens]
          Length = 270

 Score =  583 bits (1503), Expect = e-167
 Identities = 270/270 (100%), Positives = 270/270 (100%)

Query: 1   MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN 60
           MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
Sbjct: 1   MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN 60

Query: 61  LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH 120
           LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH
Sbjct: 61  LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH 120

Query: 121 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT 180
           HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
Sbjct: 121 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT 180

Query: 181 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI 240
           FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI
Sbjct: 181 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI 240

Query: 241 GFWRRLEDLIQGLTGEKPRADDMKWAQKIK 270
           GFWRRLEDLIQGLTGEKPRADDMKWAQKIK
Sbjct: 241 GFWRRLEDLIQGLTGEKPRADDMKWAQKIK 270


>gi|241982751 transmembrane protein 189 isoform 2 [Homo sapiens]
          Length = 267

 Score =  572 bits (1474), Expect = e-163
 Identities = 267/270 (98%), Positives = 267/270 (98%), Gaps = 3/270 (1%)

Query: 1   MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN 60
           MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
Sbjct: 1   MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN 60

Query: 61  LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH 120
           LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPI   AFIRPFREH
Sbjct: 61  LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPI---AFIRPFREH 117

Query: 121 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT 180
           HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
Sbjct: 118 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT 177

Query: 181 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI 240
           FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI
Sbjct: 178 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI 237

Query: 241 GFWRRLEDLIQGLTGEKPRADDMKWAQKIK 270
           GFWRRLEDLIQGLTGEKPRADDMKWAQKIK
Sbjct: 238 GFWRRLEDLIQGLTGEKPRADDMKWAQKIK 267


>gi|40806190 TMEM189-UBE2V1 readthrough transcript [Homo sapiens]
          Length = 370

 Score =  501 bits (1291), Expect = e-142
 Identities = 238/255 (93%), Positives = 242/255 (94%), Gaps = 5/255 (1%)

Query: 1   MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN 60
           MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN
Sbjct: 1   MAGAEDWPGQQLELDEDEASCCRWGAQHAGARELAALYSPGKRLQEWCSVILCFSLIAHN 60

Query: 61  LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH 120
           LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH
Sbjct: 61  LVHLLLLARWEDTPLVILGVVAGALIADFLSGLVHWGADTWGSVELPIVGKAFIRPFREH 120

Query: 121 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT 180
           HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT
Sbjct: 121 HIDPTAITRHDFIETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLYPWECFVFCLIIFGT 180

Query: 181 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTGWLNYPLEKI 240
           FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTG +  P    
Sbjct: 181 FTNQIHKWSHTYFGLPRWVTLLQDWHVILPRKHHRIHHVSPHETYFCITTG-VKVPRN-- 237

Query: 241 GFWRRLEDLIQGLTG 255
             +R LE+L +G  G
Sbjct: 238 --FRLLEELEEGQKG 250


>gi|4505719 peroxisomal biogenesis factor 11 beta [Homo sapiens]
          Length = 259

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 215 RIHHVSPHETYFCITTGWLNYPLEKIGFWRRLEDLIQGLTGEKPRADDMKWAQK 268
           R  H+S     FCIT   LN  L    ++     L  G +G  PR D  KWAQ+
Sbjct: 73  RAVHLSDVVLRFCITVSHLNRAL----YFACDNVLWAGKSGLAPRVDQEKWAQR 122


>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
          Length = 2285

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 86   IADFLSGLVHW---GADTWGSVELPIVGKAFIRPFREHHIDPTAITRH 130
            + +F SGL+HW   G DT   ++     K  + P R H   P A  +H
Sbjct: 1834 VQEFDSGLLHWRIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKH 1881


>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
          Length = 2068

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 86   IADFLSGLVHW---GADTWGSVELPIVGKAFIRPFREHHIDPTAITRH 130
            + +F SGL+HW   G DT   ++     K  + P R H   P A  +H
Sbjct: 1617 VQEFDSGLLHWRIGGGDTTEHIQTHFESKTELLPSRPHAPCPPAPRKH 1664


>gi|150378539 piccolo isoform 1 [Homo sapiens]
          Length = 5142

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 133  IETNGDNCLVTLLPLLNMAYKFRTHSPEALEQLY 166
            ++T+G+  +V +L   N+ YKF+  SP+ L  LY
Sbjct: 5019 MKTDGEQLIVEILQCRNITYKFK--SPDHLPDLY 5050


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,526,143
Number of Sequences: 37866
Number of extensions: 525560
Number of successful extensions: 1243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1238
Number of HSP's gapped (non-prelim): 8
length of query: 270
length of database: 18,247,518
effective HSP length: 101
effective length of query: 169
effective length of database: 14,423,052
effective search space: 2437495788
effective search space used: 2437495788
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.