Search of human proteins with 40288201

Search of human proteins with 40288201

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40288201 LysM, putative peptidoglycan-binding, domain
containing 4 [Homo sapiens]
         (297 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40288201 LysM, putative peptidoglycan-binding, domain contain...   606   e-174
gi|84370276 LysM, putative peptidoglycan-binding, domain contain...    89   6e-18
gi|166795254 ankyrin repeat domain 13C [Homo sapiens]                  30   2.0  
gi|239755621 PREDICTED: hypothetical protein XP_002344643 [Homo ...    29   4.4  
gi|239750130 PREDICTED: hypothetical protein XP_002347283 [Homo ...    29   4.4  
gi|239744438 PREDICTED: hypothetical protein XP_002343146 [Homo ...    29   4.4  

>gi|40288201 LysM, putative peptidoglycan-binding, domain containing
           4 [Homo sapiens]
          Length = 297

 Score =  606 bits (1563), Expect = e-174
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MAVGTRGTLLKKSLTVWFCGPGARSATRAVSTSLPRREQVTWCCCSGSWPRRTASTSWRC 60
           MAVGTRGTLLKKSLTVWFCGPGARSATRAVSTSLPRREQVTWCCCSGSWPRRTASTSWRC
Sbjct: 1   MAVGTRGTLLKKSLTVWFCGPGARSATRAVSTSLPRREQVTWCCCSGSWPRRTASTSWRC 60

Query: 61  SMAANTFYFRPNGAGDTRQNLIPDFYAFRVINNGKVADIKKVNNFIREQDLYALKSVKIP 120
           SMAANTFYFRPNGAGDTRQNLIPDFYAFRVINNGKVADIKKVNNFIREQDLYALKSVKIP
Sbjct: 61  SMAANTFYFRPNGAGDTRQNLIPDFYAFRVINNGKVADIKKVNNFIREQDLYALKSVKIP 120

Query: 121 VRNHGILMETHKELKPLLSPSSETTVTVELPEADRAGAGTGAQAGQLMGFFKGIDQDIER 180
           VRNHGILMETHKELKPLLSPSSETTVTVELPEADRAGAGTGAQAGQLMGFFKGIDQDIER
Sbjct: 121 VRNHGILMETHKELKPLLSPSSETTVTVELPEADRAGAGTGAQAGQLMGFFKGIDQDIER 180

Query: 181 AVQSEIFLHESYCMDTSHQPLLPAPPKTPMDGADCGIQWWNAVFIMLLIGIVLPVFYLVY 240
           AVQSEIFLHESYCMDTSHQPLLPAPPKTPMDGADCGIQWWNAVFIMLLIGIVLPVFYLVY
Sbjct: 181 AVQSEIFLHESYCMDTSHQPLLPAPPKTPMDGADCGIQWWNAVFIMLLIGIVLPVFYLVY 240

Query: 241 FKIQASGETPNSLNTTVIPNGSMAMGTVPGQAPRLAVAVPAVTSADSQFSQTTQAGS 297
           FKIQASGETPNSLNTTVIPNGSMAMGTVPGQAPRLAVAVPAVTSADSQFSQTTQAGS
Sbjct: 241 FKIQASGETPNSLNTTVIPNGSMAMGTVPGQAPRLAVAVPAVTSADSQFSQTTQAGS 297


>gi|84370276 LysM, putative peptidoglycan-binding, domain containing
           3 [Homo sapiens]
          Length = 306

 Score = 88.6 bits (218), Expect = 6e-18
 Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 11/160 (6%)

Query: 96  VADIKKVNNFIREQDLYALKSVKIPVRNHGILMETHKELKPLLSPSSETTVTVELPEADR 155
           VADIK+VNN I +QD +AL+S+KIPV+    L ET    K   + S  ++V     + + 
Sbjct: 86  VADIKRVNNLISDQDFFALRSIKIPVKKFSSLTETLCPPKGRQT-SRHSSVQYSSEQQEI 144

Query: 156 AGAGTGAQAGQLMG-FFKGIDQDIERAVQ----SEIFLHESYCMDTSHQPLLPAPPKT-- 208
             A          G F K +D+DIE+ V+        L+E     T+ Q       K   
Sbjct: 145 LPANDSLAYSDSAGSFLKEVDRDIEQIVKCTDNKRENLNEVVSALTAQQMRFEPDNKNTQ 204

Query: 209 ---PMDGADCGIQWWNAVFIMLLIGIVLPVFYLVYFKIQA 245
              P  GAD GI WW AV IML++GI+ PVFYL+Y++I A
Sbjct: 205 RKDPYYGADWGIGWWTAVVIMLIVGIITPVFYLLYYEILA 244


>gi|166795254 ankyrin repeat domain 13C [Homo sapiens]
          Length = 541

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)

Query: 80  NLIPDFYAFRVINNGKVADIKKVNNFIREQDLYALKSVKIPVRNHGILMETHKE--LKPL 137
           N + DFY    + NG V + +K    + E+D+   K++   +   G +ME + E   +  
Sbjct: 356 NFLADFY----LVNGLVLESRKRREHLSEEDILRNKAIMESLSKGGNIMEQNFEPIRRQS 411

Query: 138 LSPSSETTVTVE 149
           L+P  + T+T E
Sbjct: 412 LTPPPQNTITWE 423


>gi|239755621 PREDICTED: hypothetical protein XP_002344643 [Homo
          sapiens]
          Length = 79

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 19 CGPGARSATRAVSTSLPRREQVTWCCCSGSWPRRTASTSWRCSMA 63
          C   A++        LP  E       +  W R    TSW+CS A
Sbjct: 3  CSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRA 47


>gi|239750130 PREDICTED: hypothetical protein XP_002347283 [Homo
          sapiens]
          Length = 79

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 19 CGPGARSATRAVSTSLPRREQVTWCCCSGSWPRRTASTSWRCSMA 63
          C   A++        LP  E       +  W R    TSW+CS A
Sbjct: 3  CSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRA 47


>gi|239744438 PREDICTED: hypothetical protein XP_002343146 [Homo
          sapiens]
          Length = 79

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/45 (28%), Positives = 17/45 (37%)

Query: 19 CGPGARSATRAVSTSLPRREQVTWCCCSGSWPRRTASTSWRCSMA 63
          C   A++        LP  E       +  W R    TSW+CS A
Sbjct: 3  CSESAKAGLNTAPVRLPPAETKKVMSAASRWIRSLVRTSWKCSRA 47


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,422,893
Number of Sequences: 37866
Number of extensions: 503788
Number of successful extensions: 1492
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1486
Number of HSP's gapped (non-prelim): 6
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.