Search of human proteins with 39573716

Search of human proteins with 39573716

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|39573716 lipocalin 6 [Homo sapiens]
         (163 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|39573716 lipocalin 6 [Homo sapiens]                                327   2e-90
gi|42714611 lipocalin 15 [Homo sapiens]                                69   1e-12
gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]                48   3e-06
gi|126116598 lipocalin 10 [Homo sapiens]                               44   8e-05
gi|38455402 lipocalin 2 [Homo sapiens]                                 37   0.006
gi|4504963 lipocalin 1 precursor [Homo sapiens]                        33   0.11 
gi|148226288 lipocalin-like 1 [Homo sapiens]                           29   1.6  
gi|157276588 basonuclin 1 [Homo sapiens]                               28   2.7  
gi|254039600 F-box and leucine-rich repeat protein 17 [Homo sapi...    27   6.0  
gi|239754759 PREDICTED: similar to zinc finger protein 30 [Homo ...    27   6.0  
gi|239749287 PREDICTED: hypothetical protein XP_002346980 [Homo ...    27   6.0  
gi|239743377 PREDICTED: hypothetical protein XP_002342831 [Homo ...    27   6.0  
gi|239509071 PREDICTED: similar to zinc finger protein 30 [Homo ...    27   6.0  

>gi|39573716 lipocalin 6 [Homo sapiens]
          Length = 163

 Score =  327 bits (839), Expect = 2e-90
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MGGLLLAAFLALVSVPRAQAVWLGRLDPEQLLGPWYVLAVASREKGFAMEKDMKNVVGVV 60
           MGGLLLAAFLALVSVPRAQAVWLGRLDPEQLLGPWYVLAVASREKGFAMEKDMKNVVGVV
Sbjct: 1   MGGLLLAAFLALVSVPRAQAVWLGRLDPEQLLGPWYVLAVASREKGFAMEKDMKNVVGVV 60

Query: 61  VTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAII 120
           VTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAII
Sbjct: 61  VTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAII 120

Query: 121 FTQLEFGDEPFNTVELYSLTETASQEAMGLFTKWSRSLGFLSQ 163
           FTQLEFGDEPFNTVELYSLTETASQEAMGLFTKWSRSLGFLSQ
Sbjct: 121 FTQLEFGDEPFNTVELYSLTETASQEAMGLFTKWSRSLGFLSQ 163


>gi|42714611 lipocalin 15 [Homo sapiens]
          Length = 184

 Score = 69.3 bits (168), Expect = 1e-12
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 2/161 (1%)

Query: 1   MGGLLLAAFLALVSVPRAQAVWLGRLD--PEQLLGPWYVLAVASREKGFAMEKDMKNVVG 58
           M   LL A L L+  P AQA  L + D   E+  G WYV+++AS  + F  +KD  ++  
Sbjct: 1   MMSFLLGAILTLLWAPTAQAEVLLQPDFNAEKFSGLWYVVSMASDCRVFLGKKDHLSMST 60

Query: 59  VVVTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYA 118
             +  T E  L       G  GC+Q   + +K  S   F  P++G L++ ++ T++  +A
Sbjct: 61  RAIRPTEEGGLHVHMEFPGADGCNQVDAEYLKVGSEGHFRVPALGYLDVRIVDTDYSSFA 120

Query: 119 IIFTQLEFGDEPFNTVELYSLTETASQEAMGLFTKWSRSLG 159
           +++   E        V+LYS T+  S +A+  F  +  +LG
Sbjct: 121 VLYIYKELEGALSTMVQLYSRTQDVSPQALKSFQDFYPTLG 161


>gi|32171249 prostaglandin H2 D-isomerase [Homo sapiens]
          Length = 190

 Score = 48.1 bits (113), Expect = 3e-06
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 4/164 (2%)

Query: 1   MGGLLLAAFLALVSVPRAQAVWLGRLDPEQLLGPWYVLAVASREKGFAMEKDMKNVVGVV 60
           MG  LL     L + P AQ         ++ LG W+   +AS       +K   ++   V
Sbjct: 9   MGLALLGVLGDLQAAPEAQVSVQPNFQQDKFLGRWFSAGLASNSSWLREKKAALSMCKSV 68

Query: 61  VTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNS--GWVFENPSIG-VLELWVLATNFRDY 117
           V    +  L   S+      C+   M L    S   + + +P  G    + V+ T++  Y
Sbjct: 69  VAPATDGGLNLTSTFLRKNQCETRTMLLQPAGSLGSYSYRSPHWGSTYSVSVVETDYDQY 128

Query: 118 AIIFTQLEFG-DEPFNTVELYSLTETASQEAMGLFTKWSRSLGF 160
           A++++Q   G  E F    LYS T+T   E    FT + ++ GF
Sbjct: 129 ALLYSQGSKGPGEDFRMATLYSRTQTPRAELKEKFTAFCKAQGF 172


>gi|126116598 lipocalin 10 [Homo sapiens]
          Length = 200

 Score = 43.5 bits (101), Expect = 8e-05
 Identities = 44/170 (25%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 2   GGLLLAAFLALVSVPRAQAV---WLGR----LDPEQLLGPWYVLAVASREKGFAMEKDMK 54
           G L+LA  L LV V  A +    W  R    L+  +  G WY+LA A+  +GF   +D +
Sbjct: 4   GLLVLALVLVLVLVLAAGSQVQEWYPRESHALNWNKFSGFWYILATATDAQGFLPARDKR 63

Query: 55  NVVGVVVTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNSGWVFENPSI------------ 102
            +   VV +     LR L +   L GC    + L K     VF N               
Sbjct: 64  KLGASVVKVNKVGQLRVLLAFRRLKGCQSQEVILRKDGKKPVFGNACAYAAGPREGQEGV 123

Query: 103 -GVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELYSLTETASQEAMGLF 151
            GV    VL+T++  Y +++ +L    + +  + L+     +S +++  F
Sbjct: 124 KGVKAFHVLSTDY-SYGLVYLRLGRATQNYKNLLLFHRQNVSSFQSLKEF 172


>gi|38455402 lipocalin 2 [Homo sapiens]
          Length = 198

 Score = 37.4 bits (85), Expect = 0.006
 Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 30  QLLGPWYVLAVASREKGFAMEKDMKNVVGVVVTLTPENNLRTLSSQHGLGGCDQSVMDLI 89
           Q  G WYV+ +A        +KD + +   +  L  + +    S       CD  +   +
Sbjct: 46  QFQGKWYVVGLAGNAI-LREDKDPQKMYATIYELKEDKSYNVTSVLFRKKKCDYWIRTFV 104

Query: 90  ------KRNSGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELYSLTETA 143
                 +   G +   P +    + V++TN+  +A++F +    +  +  + LY  T+  
Sbjct: 105 PGCQPGEFTLGNIKSYPGLTSYLVRVVSTNYNQHAMVFFKKVSQNREYFKITLYGRTKEL 164

Query: 144 SQEAMGLFTKWSRSLG 159
           + E    F ++S+SLG
Sbjct: 165 TSELKENFIRFSKSLG 180


>gi|4504963 lipocalin 1 precursor [Homo sapiens]
          Length = 176

 Score = 33.1 bits (74), Expect = 0.11
 Identities = 34/163 (20%), Positives = 74/163 (45%), Gaps = 3/163 (1%)

Query: 1   MGGLLLAAFLALVSVPRAQAVWLGRLDPEQLLGPWYVLAVASREKGFAMEKDMKNVVGVV 60
           M  LLLA  L L++  +A  +     + + + G WY+ A+ + ++ F  E ++++V  + 
Sbjct: 1   MKPLLLAVSLGLIAALQAHHLLASDEEIQDVSGTWYLKAM-TVDREFP-EMNLESVTPMT 58

Query: 61  VTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAII 120
           +T     NL    +    G C Q V  ++++           G    +++ ++ +D+ I 
Sbjct: 59  LTTLEGGNLEAKVTMLISGRC-QEVKAVLEKTDEPGKYTADGGKHVAYIIRSHVKDHYIF 117

Query: 121 FTQLEFGDEPFNTVELYSLTETASQEAMGLFTKWSRSLGFLSQ 163
           + + E   +P   V+L       + EA+  F K + + G  ++
Sbjct: 118 YCEGELHGKPVRGVKLVGRDPKNNLEALEDFEKAAGARGLSTE 160


>gi|148226288 lipocalin-like 1 [Homo sapiens]
          Length = 164

 Score = 29.3 bits (64), Expect = 1.6
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 37  VLAVASREKGFAMEKDMKNVVGVVVTLTPENNLRTLSSQHGL----GGCDQSVMDLIKRN 92
           ++ V S ++ F   KD   +   VV +TP  N   L+ + G     GGC +      +  
Sbjct: 1   MVGVVSDDQDFLDSKDTMKMA--VVLVTPLGN-GDLALKFGYPTPHGGCQKMDTTFTEGA 57

Query: 93  SGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELY 137
               F NP++ + ++ V  ++++ +A+++ ++  G      ++LY
Sbjct: 58  VPGQFSNPAMALSDIRVAFSDYQHFALLYLEMRKGGLRNQWLQLY 102


>gi|157276588 basonuclin 1 [Homo sapiens]
          Length = 994

 Score = 28.5 bits (62), Expect = 2.7
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 4/68 (5%)

Query: 78  LGGCDQSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELY 137
           L   D ++ D I+   G+V ++ S  VL+ W + T+  + A +   L FG E  + VEL 
Sbjct: 128 LHALDWTLQDYIR---GYVLQDASGKVLDHWSIMTSEEEVATLQQFLRFG-ETKSIVELM 183

Query: 138 SLTETASQ 145
           ++ E   Q
Sbjct: 184 AIQEKEEQ 191


>gi|254039600 F-box and leucine-rich repeat protein 17 [Homo
           sapiens]
          Length = 303

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 17/78 (21%)

Query: 60  VVTLTPENNLRTLSSQHGLGGCDQSVMDLIKRNS---------GWVFENPSIGVL----- 105
           V+ LT   NL +L  +H     +++VM+++KR            W+  +  + V+     
Sbjct: 135 VIHLTKLRNLSSLDLRHITELDNETVMEIVKRCKNLSSLNLCLNWIINDRCVEVIAKEGQ 194

Query: 106 ---ELWVLATNFRDYAII 120
              EL++++    DYA+I
Sbjct: 195 NLKELYLVSCKITDYALI 212


>gi|239754759 PREDICTED: similar to zinc finger protein 30 [Homo
           sapiens]
          Length = 546

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 83  QSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELYSLTET 142
           ++V +L++  + W+   P     E   +   F D A+ F++LE+G       ELY     
Sbjct: 114 ENVENLLRNRNFWILRLPPGSKGEAPKVPVTFDDVAVYFSELEWGKLEDWQKELYKHVMR 173

Query: 143 ASQEAM 148
            + E +
Sbjct: 174 GNYETL 179


>gi|239749287 PREDICTED: hypothetical protein XP_002346980 [Homo
           sapiens]
          Length = 546

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 83  QSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELYSLTET 142
           ++V +L++  + W+   P     E   +   F D A+ F++LE+G       ELY     
Sbjct: 114 ENVENLLRNRNFWILRLPPGSKGEAPKVPVTFDDVAVYFSELEWGKLEDWQKELYKHVMR 173

Query: 143 ASQEAM 148
            + E +
Sbjct: 174 GNYETL 179


>gi|239743377 PREDICTED: hypothetical protein XP_002342831 [Homo
           sapiens]
          Length = 546

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 83  QSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELYSLTET 142
           ++V +L++  + W+   P     E   +   F D A+ F++LE+G       ELY     
Sbjct: 114 ENVENLLRNRNFWILRLPPGSKGEAPKVPVTFDDVAVYFSELEWGKLEDWQKELYKHVMR 173

Query: 143 ASQEAM 148
            + E +
Sbjct: 174 GNYETL 179


>gi|239509071 PREDICTED: similar to zinc finger protein 30 [Homo
           sapiens]
          Length = 546

 Score = 27.3 bits (59), Expect = 6.0
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 83  QSVMDLIKRNSGWVFENPSIGVLELWVLATNFRDYAIIFTQLEFGDEPFNTVELYSLTET 142
           ++V +L++  + W+   P     E   +   F D A+ F++LE+G       ELY     
Sbjct: 114 ENVENLLRNRNFWILRLPPGSKGEAPKVPVTFDDVAVYFSELEWGKLEDWQKELYKHVMR 173

Query: 143 ASQEAM 148
            + E +
Sbjct: 174 GNYETL 179


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,573,843
Number of Sequences: 37866
Number of extensions: 202843
Number of successful extensions: 418
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 13
length of query: 163
length of database: 18,247,518
effective HSP length: 94
effective length of query: 69
effective length of database: 14,688,114
effective search space: 1013479866
effective search space used: 1013479866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.