Search of human proteins with 38176287

Search of human proteins with 38176287

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38176287 branched chain aminotransferase 1, cytosolic [Homo
sapiens]
         (386 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38176287 branched chain aminotransferase 1, cytosolic [Homo s...   799   0.0  
gi|50658084 branched chain aminotransferase 2, mitochondrial [Ho...   452   e-127
gi|119120915 rhophilin 1 [Homo sapiens]                                30   2.8  
gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]      29   8.2  
gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]      29   8.2  
gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]      29   8.2  
gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens]       29   8.2  

>gi|38176287 branched chain aminotransferase 1, cytosolic [Homo
           sapiens]
          Length = 386

 Score =  799 bits (2064), Expect = 0.0
 Identities = 386/386 (100%), Positives = 386/386 (100%)

Query: 1   MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV 60
           MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV
Sbjct: 1   MKDCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTV 60

Query: 61  EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM 120
           EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM
Sbjct: 61  EWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRM 120

Query: 121 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK 180
           YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK
Sbjct: 121 YRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTK 180

Query: 181 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN 240
           ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN
Sbjct: 181 ALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDN 240

Query: 241 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ 300
           GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ
Sbjct: 241 GCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQ 300

Query: 301 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK 360
           WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK
Sbjct: 301 WGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPK 360

Query: 361 LASRILSKLTDIQYGREESDWTIVLS 386
           LASRILSKLTDIQYGREESDWTIVLS
Sbjct: 361 LASRILSKLTDIQYGREESDWTIVLS 386


>gi|50658084 branched chain aminotransferase 2, mitochondrial [Homo
           sapiens]
          Length = 392

 Score =  452 bits (1163), Expect = e-127
 Identities = 215/367 (58%), Positives = 273/367 (74%), Gaps = 2/367 (0%)

Query: 16  GGSKEVVGTFKAKDLIVTPATILKEKPDPNN-LVFGTVFTDHMLTVEWSSEFGWEKPHIK 74
           G  +    +FKA DL +       +KP P   LVFG  FTDHML VEW+ + GW +P I+
Sbjct: 23  GPRRYASSSFKAADLQLEMTQKPHKKPGPGEPLVFGKTFTDHMLMVEWNDK-GWGQPRIQ 81

Query: 75  PLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDK 134
           P QNL+LHP SS+LHY+++LFEG+KAF+G D ++RLF+P LNMDRM RSA+R  LP FDK
Sbjct: 82  PFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNMDRMLRSAMRLCLPSFDK 141

Query: 135 EELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYF 194
            ELLECI++L+++D++WVP +   SLY+RP  IG EPSLGV +PT+ALLFV+L PVG YF
Sbjct: 142 LELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPTRALLFVILCPVGAYF 201

Query: 195 SSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ 254
             G+  PVSL A+P ++RAW GG G+ K+GGNYG ++  Q EA+  GC+QVLWLYG DHQ
Sbjct: 202 PGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYGPDHQ 261

Query: 255 ITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMD 314
           +TEVGTMN+F+YW +EDG  EL TPPL+G+ILPGV R+ +LD+A  WGEF+V ER +TM 
Sbjct: 262 LTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMK 321

Query: 315 DLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQY 374
            L  ALE  RVRE+FGSGTAC VCPV  ILYK   +HIPTMENGP+L  R   +L +IQY
Sbjct: 322 QLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTMENGPELILRFQKELKEIQY 381

Query: 375 GREESDW 381
           G    +W
Sbjct: 382 GIRAHEW 388


>gi|119120915 rhophilin 1 [Homo sapiens]
          Length = 670

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 14/59 (23%)

Query: 171 PSLGVKKPTKALLFVLLSPVGPYFSS---GTFNPVSLWANPKYVRAW-----KGGTGDC 221
           PSLG ++P      VLL P G   S    G   P S WA+P+ +  W     +G TG C
Sbjct: 597 PSLGDRRP------VLLGPRGLLRSQREHGCKTPASTWASPRPLLNWSRKAQQGKTGGC 649


>gi|68161546 misshapen/NIK-related kinase isoform 4 [Homo sapiens]
          Length = 1312

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 227  YGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIIL 286
            YGSS       VD+G    +++      I    T +  ++  N DG E L     +G+ +
Sbjct: 1161 YGSSAGFHAVDVDSGNSYDIYI---PVHIQSQITPHAIIFLPNTDGMEMLLCYEDEGVYV 1217

Query: 287  PGVTRRCILDLAHQWGEFKVSERYLTMDDL 316
                 R I D+  QWGE   S  Y+  + +
Sbjct: 1218 -NTYGRIIKDVVLQWGEMPTSVAYICSNQI 1246


>gi|24850117 misshapen/NIK-related kinase isoform 2 [Homo sapiens]
          Length = 1303

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 227  YGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIIL 286
            YGSS       VD+G    +++      I    T +  ++  N DG E L     +G+ +
Sbjct: 1152 YGSSAGFHAVDVDSGNSYDIYI---PVHIQSQITPHAIIFLPNTDGMEMLLCYEDEGVYV 1208

Query: 287  PGVTRRCILDLAHQWGEFKVSERYLTMDDL 316
                 R I D+  QWGE   S  Y+  + +
Sbjct: 1209 -NTYGRIIKDVVLQWGEMPTSVAYICSNQI 1237


>gi|27436917 misshapen/NIK-related kinase isoform 3 [Homo sapiens]
          Length = 1332

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 227  YGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIIL 286
            YGSS       VD+G    +++      I    T +  ++  N DG E L     +G+ +
Sbjct: 1181 YGSSAGFHAVDVDSGNSYDIYI---PVHIQSQITPHAIIFLPNTDGMEMLLCYEDEGVYV 1237

Query: 287  PGVTRRCILDLAHQWGEFKVSERYLTMDDL 316
                 R I D+  QWGE   S  Y+  + +
Sbjct: 1238 -NTYGRIIKDVVLQWGEMPTSVAYICSNQI 1266


>gi|7657335 misshapen/NIK-related kinase isoform 1 [Homo sapiens]
          Length = 1295

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 227  YGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIIL 286
            YGSS       VD+G    +++      I    T +  ++  N DG E L     +G+ +
Sbjct: 1144 YGSSAGFHAVDVDSGNSYDIYI---PVHIQSQITPHAIIFLPNTDGMEMLLCYEDEGVYV 1200

Query: 287  PGVTRRCILDLAHQWGEFKVSERYLTMDDL 316
                 R I D+  QWGE   S  Y+  + +
Sbjct: 1201 -NTYGRIIKDVVLQWGEMPTSVAYICSNQI 1229


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,498,235
Number of Sequences: 37866
Number of extensions: 765769
Number of successful extensions: 1449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1446
Number of HSP's gapped (non-prelim): 7
length of query: 386
length of database: 18,247,518
effective HSP length: 104
effective length of query: 282
effective length of database: 14,309,454
effective search space: 4035266028
effective search space used: 4035266028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.