Search of human proteins with 37620210

Search of human proteins with 37620210

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|37620210 hypothetical protein LOC116228 [Homo sapiens]
         (118 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|37620210 hypothetical protein LOC116228 [Homo sapiens]             248   7e-67
gi|226246682 prostaglandin reductase 2 [Homo sapiens]                  32   0.14 
gi|226246680 prostaglandin reductase 2 [Homo sapiens]                  32   0.14 
gi|22748929 prostaglandin reductase 2 [Homo sapiens]                   32   0.14 
gi|23618848 SYS1 Golgi-localized integral membrane protein homol...    30   0.53 
gi|90403590 para-hydroxybenzoate-polyprenyltransferase, mitochon...    26   7.7  

>gi|37620210 hypothetical protein LOC116228 [Homo sapiens]
          Length = 118

 Score =  248 bits (633), Expect = 7e-67
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MAAPPEPGEPEERKSLKLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCD 60
           MAAPPEPGEPEERKSLKLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCD
Sbjct: 1   MAAPPEPGEPEERKSLKLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCD 60

Query: 61  VGVGGFILVTLGCWFHCRYNYAKQRIQERIAREEIKKKILYEGTHLDPERKHNGSSSN 118
           VGVGGFILVTLGCWFHCRYNYAKQRIQERIAREEIKKKILYEGTHLDPERKHNGSSSN
Sbjct: 61  VGVGGFILVTLGCWFHCRYNYAKQRIQERIAREEIKKKILYEGTHLDPERKHNGSSSN 118


>gi|226246682 prostaglandin reductase 2 [Homo sapiens]
          Length = 351

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 37  GSLGSVVAGFGHFLFTSRIRRSCDVGVGG----FILVTLGCWFHCRYNYAKQRIQERI 90
           G+ GSV    GHFL  SR+     VG+ G     IL+T    F    NY K  + E++
Sbjct: 165 GACGSVAGQIGHFLGCSRV-----VGICGTHEKCILLTSELGFDAAINYKKDNVAEQL 217


>gi|226246680 prostaglandin reductase 2 [Homo sapiens]
          Length = 351

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 37  GSLGSVVAGFGHFLFTSRIRRSCDVGVGG----FILVTLGCWFHCRYNYAKQRIQERI 90
           G+ GSV    GHFL  SR+     VG+ G     IL+T    F    NY K  + E++
Sbjct: 165 GACGSVAGQIGHFLGCSRV-----VGICGTHEKCILLTSELGFDAAINYKKDNVAEQL 217


>gi|22748929 prostaglandin reductase 2 [Homo sapiens]
          Length = 351

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 37  GSLGSVVAGFGHFLFTSRIRRSCDVGVGG----FILVTLGCWFHCRYNYAKQRIQERI 90
           G+ GSV    GHFL  SR+     VG+ G     IL+T    F    NY K  + E++
Sbjct: 165 GACGSVAGQIGHFLGCSRV-----VGICGTHEKCILLTSELGFDAAINYKKDNVAEQL 217


>gi|23618848 SYS1 Golgi-localized integral membrane protein homolog
           isoform a [Homo sapiens]
          Length = 156

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 17  KLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCDVGVGGFILVTLGCWFH 76
           ++LGF    +TP  R S++   L ++    G   F  R ++  D  V       LGCWF+
Sbjct: 54  EILGF----STPPGRLSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFY 109


>gi|90403590 para-hydroxybenzoate-polyprenyltransferase,
           mitochondrial [Homo sapiens]
          Length = 384

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 15  SLKLLGFLDVENTPCARHSILYGSLGSVVAGFGHFLFTSRIRRSCD----------VGVG 64
           S+ +LG L +      + +  Y +LG+V A   H ++T  I R  D          +G+ 
Sbjct: 296 SVAMLGALSLVGVNSGQTAPYYAALGAVGAHLTHQIYTLDIHRPEDCWNKFISNRTLGLI 355

Query: 65  GFILVTLG-CWFHCRYNYAKQRIQERI 90
            F+ + LG  W   + +  K+ I+ +I
Sbjct: 356 VFLGIVLGNLWKEKKTDKTKKGIENKI 382


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,079,655
Number of Sequences: 37866
Number of extensions: 191331
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 6
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.