Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 37577117

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|37577117 C-type lectin domain family 4, member A isoform 4
[Homo sapiens]
         (165 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|37577117 C-type lectin domain family 4, member A isoform 4 [H...   358   e-100
gi|148536836 C-type lectin domain family 4, member A isoform 3 [...   342   1e-94
gi|37577119 C-type lectin domain family 4, member A isoform 2 [H...   338   2e-93
gi|7705338 C-type lectin domain family 4, member A isoform 1 [Ho...   308   1e-84
gi|45580692 C-type lectin domain family 4, member C isoform 2 [H...   199   9e-52
gi|18466806 C-type lectin domain family 4, member C isoform 1 [H...   199   9e-52
gi|55742774 dectin-2 [Homo sapiens]                                   171   3e-43
gi|31542313 C-type lectin domain family 4, member D [Homo sapiens]    142   2e-34
gi|7657333 C-type lectin domain family 4, member E [Homo sapiens]     124   4e-29
gi|53832016 C-type lectin, superfamily member 14 isoform 2 [Homo...   100   1e-21
gi|33667103 C-type lectin, superfamily member 14 isoform 1 [Homo...    98   3e-21
gi|223278347 C-type lectin domain family 4, member M isoform 9 [...    89   2e-18
gi|223278339 C-type lectin domain family 4, member M isoform 7 [...    89   2e-18
gi|223278337 C-type lectin domain family 4, member M isoform 12 ...    89   2e-18
gi|223278335 C-type lectin domain family 4, member M isoform 2 [...    89   2e-18
gi|223278350 C-type lectin domain family 4, member M isoform 8 [...    89   2e-18
gi|223278342 C-type lectin domain family 4, member M isoform 11 ...    89   2e-18
gi|42542390 C-type lectin domain family 4, member M isoform 1 [H...    89   2e-18
gi|18426877 asialoglycoprotein receptor 2 isoform c [Homo sapiens]     86   1e-17
gi|18426875 asialoglycoprotein receptor 2 isoform b [Homo sapiens]     86   1e-17
gi|18426873 asialoglycoprotein receptor 2 isoform a [Homo sapiens]     86   1e-17
gi|4502253 asialoglycoprotein receptor 2 isoform a [Homo sapiens]      86   1e-17
gi|18641360 collectin sub-family member 12 [Homo sapiens]              84   6e-17
gi|4502251 asialoglycoprotein receptor 1 [Homo sapiens]                84   7e-17
gi|223029517 CD209 molecule isoform 8 [Homo sapiens]                   79   1e-15
gi|223029386 CD209 molecule isoform 3 [Homo sapiens]                   79   1e-15
gi|223029384 CD209 molecule isoform 7 [Homo sapiens]                   79   1e-15
gi|223029382 CD209 molecule isoform 6 [Homo sapiens]                   79   1e-15
gi|223029380 CD209 molecule isoform 5 [Homo sapiens]                   79   1e-15
gi|10863957 CD209 molecule isoform 1 [Homo sapiens]                    79   1e-15

>gi|37577117 C-type lectin domain family 4, member A isoform 4 [Homo
           sapiens]
          Length = 165

 Score =  358 bits (920), Expect = e-100
 Identities = 165/165 (100%), Positives = 165/165 (100%)

Query: 1   MTSEITYAEVRFKNEFKSSGINTASSAETAWSCCPKNWKSFSSNCYFISTESASWQDSEK 60
           MTSEITYAEVRFKNEFKSSGINTASSAETAWSCCPKNWKSFSSNCYFISTESASWQDSEK
Sbjct: 1   MTSEITYAEVRFKNEFKSSGINTASSAETAWSCCPKNWKSFSSNCYFISTESASWQDSEK 60

Query: 61  DCARMEAHLLVINTQEEQDFIFQNLQEESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWH 120
           DCARMEAHLLVINTQEEQDFIFQNLQEESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWH
Sbjct: 61  DCARMEAHLLVINTQEEQDFIFQNLQEESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWH 120

Query: 121 PREPSDPNERCVVLNFRKSPKRWGWNDVNCLGPQRSVCEMMKIHL 165
           PREPSDPNERCVVLNFRKSPKRWGWNDVNCLGPQRSVCEMMKIHL
Sbjct: 121 PREPSDPNERCVVLNFRKSPKRWGWNDVNCLGPQRSVCEMMKIHL 165


>gi|148536836 C-type lectin domain family 4, member A isoform 3
           [Homo sapiens]
          Length = 198

 Score =  342 bits (876), Expect = 1e-94
 Identities = 165/198 (83%), Positives = 165/198 (83%), Gaps = 33/198 (16%)

Query: 1   MTSEITYAEVRFKNEFKSSGINTASSA--------------------------------- 27
           MTSEITYAEVRFKNEFKSSGINTASSA                                 
Sbjct: 1   MTSEITYAEVRFKNEFKSSGINTASSAVFFQKYSQLLEKKTTKELVHTTLECVKKNMPVE 60

Query: 28  ETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQE 87
           ETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQE
Sbjct: 61  ETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQE 120

Query: 88  ESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWND 147
           ESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWND
Sbjct: 121 ESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWND 180

Query: 148 VNCLGPQRSVCEMMKIHL 165
           VNCLGPQRSVCEMMKIHL
Sbjct: 181 VNCLGPQRSVCEMMKIHL 198


>gi|37577119 C-type lectin domain family 4, member A isoform 2 [Homo
           sapiens]
          Length = 204

 Score =  338 bits (866), Expect = 2e-93
 Identities = 164/204 (80%), Positives = 165/204 (80%), Gaps = 39/204 (19%)

Query: 1   MTSEITYAEVRFKNEFKSSGINTASSA--------------------------------- 27
           MTSEITYAEVRFKNEFKSSGINTASSA                                 
Sbjct: 1   MTSEITYAEVRFKNEFKSSGINTASSAASKERTAPHKSNTGFPKLLCASLLIFFLLLAIS 60

Query: 28  ------ETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI 81
                 +TAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI
Sbjct: 61  FFIAFVKTAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI 120

Query: 82  FQNLQEESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPK 141
           FQNLQEESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPK
Sbjct: 121 FQNLQEESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPK 180

Query: 142 RWGWNDVNCLGPQRSVCEMMKIHL 165
           RWGWNDVNCLGPQRSVCEMMKIHL
Sbjct: 181 RWGWNDVNCLGPQRSVCEMMKIHL 204


>gi|7705338 C-type lectin domain family 4, member A isoform 1 [Homo
           sapiens]
          Length = 237

 Score =  308 bits (789), Expect = 1e-84
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 28  ETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQE 87
           ETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQE
Sbjct: 100 ETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQE 159

Query: 88  ESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWND 147
           ESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWND
Sbjct: 160 ESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWND 219

Query: 148 VNCLGPQRSVCEMMKIHL 165
           VNCLGPQRSVCEMMKIHL
Sbjct: 220 VNCLGPQRSVCEMMKIHL 237


>gi|45580692 C-type lectin domain family 4, member C isoform 2 [Homo
           sapiens]
          Length = 182

 Score =  199 bits (506), Expect = 9e-52
 Identities = 84/135 (62%), Positives = 108/135 (80%), Gaps = 1/135 (0%)

Query: 31  WSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESA 90
           WSCCP  W SF S+CYFIST   SW  S+K+C+ M A L+VINT+EEQDFI QNL+  S+
Sbjct: 49  WSCCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSS 108

Query: 91  YFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWNDVNC 150
           YF+GLSDP G+RHWQWVDQTPYNE+ TFWH  EP++ +ERC ++NFR S + WGWND++C
Sbjct: 109 YFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSS-EEWGWNDIHC 167

Query: 151 LGPQRSVCEMMKIHL 165
             PQ+S+C+M KI++
Sbjct: 168 HVPQKSICKMKKIYI 182


>gi|18466806 C-type lectin domain family 4, member C isoform 1 [Homo
           sapiens]
          Length = 213

 Score =  199 bits (506), Expect = 9e-52
 Identities = 84/135 (62%), Positives = 108/135 (80%), Gaps = 1/135 (0%)

Query: 31  WSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESA 90
           WSCCP  W SF S+CYFIST   SW  S+K+C+ M A L+VINT+EEQDFI QNL+  S+
Sbjct: 80  WSCCPTPWTSFQSSCYFISTGMQSWTKSQKNCSVMGADLVVINTREEQDFIIQNLKRNSS 139

Query: 91  YFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWNDVNC 150
           YF+GLSDP G+RHWQWVDQTPYNE+ TFWH  EP++ +ERC ++NFR S + WGWND++C
Sbjct: 140 YFLGLSDPGGRRHWQWVDQTPYNENVTFWHSGEPNNLDERCAIINFRSS-EEWGWNDIHC 198

Query: 151 LGPQRSVCEMMKIHL 165
             PQ+S+C+M KI++
Sbjct: 199 HVPQKSICKMKKIYI 213


>gi|55742774 dectin-2 [Homo sapiens]
          Length = 209

 Score =  171 bits (432), Expect = 3e-43
 Identities = 73/136 (53%), Positives = 95/136 (69%), Gaps = 1/136 (0%)

Query: 30  AWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEES 89
           AW CCP +WKSF S+CYFIS+E   W  SE++C  M AHL+V NT+ EQ+FI Q L E  
Sbjct: 75  AWGCCPASWKSFGSSCYFISSEEKVWSKSEQNCVEMGAHLVVFNTEAEQNFIVQQLNESF 134

Query: 90  AYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSDPNERCVVLNFRKSPKRWGWNDVN 149
           +YF+GLSDP+G  +WQW+D+TPY ++  FWH  EP+   E+C  + F K P  WGWNDV 
Sbjct: 135 SYFLGLSDPQGNNNWQWIDKTPYEKNVRFWHLGEPNHSAEQCASIVFWK-PTGWGWNDVI 193

Query: 150 CLGPQRSVCEMMKIHL 165
           C   + S+CEM KI+L
Sbjct: 194 CETRRNSICEMNKIYL 209


>gi|31542313 C-type lectin domain family 4, member D [Homo sapiens]
          Length = 215

 Score =  142 bits (357), Expect = 2e-34
 Identities = 63/152 (41%), Positives = 95/152 (62%), Gaps = 10/152 (6%)

Query: 10  VRFKNEFKSSGINTASSAETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHL 69
           ++ K+E KS+  +T       W+CCP +W++F SNCYF  T++ +W +SE++C+ M AHL
Sbjct: 67  IKEKSELKSAEGST-------WNCCPIDWRAFQSNCYFPLTDNKTWAESERNCSGMGAHL 119

Query: 70  LVINTQEEQDFIFQNLQEESAYFVGLSDPEGQRHWQWVDQTPYNESSTFWHPREP-SDPN 128
           + I+T+ EQ+FI Q L    +YF+GL D   +  W+WVDQTP+N    FWH  EP +   
Sbjct: 120 MTISTEAEQNFIIQFLDRRLSYFLGLRDENAKGQWRWVDQTPFNPRRVFWHKNEPDNSQG 179

Query: 129 ERCVVLNFRKSPKRWGWNDVNCLGPQRSVCEM 160
           E CVVL + +   +W WNDV C      +C++
Sbjct: 180 ENCVVLVYNQD--KWAWNDVPCNFEASRICKI 209


>gi|7657333 C-type lectin domain family 4, member E [Homo sapiens]
          Length = 219

 Score =  124 bits (311), Expect = 4e-29
 Identities = 59/135 (43%), Positives = 83/135 (61%), Gaps = 3/135 (2%)

Query: 32  SCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESAY 91
           +CCP NW+ F S+CYF ST++ SW  S K+C+ M AHL+VIN+QEEQ+F+     +   +
Sbjct: 78  NCCPLNWEYFQSSCYFFSTDTISWALSLKNCSAMGAHLVVINSQEEQEFLSYKKPKMREF 137

Query: 92  FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD--PNERCVVLNFRKSPKRWGWNDVN 149
           F+GLSD   +  WQWVD TP  +S +FW   EP++    E C  +    +P R  WNDV 
Sbjct: 138 FIGLSDQVVEGQWQWVDGTPLTKSLSFWDVGEPNNIATLEDCATMRDSSNP-RQNWNDVT 196

Query: 150 CLGPQRSVCEMMKIH 164
           C      +CEM+ I+
Sbjct: 197 CFLNYFRICEMVGIN 211


>gi|53832016 C-type lectin, superfamily member 14 isoform 2 [Homo
           sapiens]
          Length = 292

 Score = 99.8 bits (247), Expect = 1e-21
 Identities = 58/146 (39%), Positives = 75/146 (51%), Gaps = 17/146 (11%)

Query: 22  NTASSAETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI 81
           N    A T  +CCP NW     +CY+ S    SW ++EK C    AHL+VIN++EEQ+F+
Sbjct: 145 NNGEEASTEGTCCPVNWVEHQDSCYWFSHSGMSWAEAEKYCQLKNAHLVVINSREEQNFV 204

Query: 82  FQNLQEESAY-FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD-------PNERCVV 133
            + L   SAY ++GLSDPEG   W+WVD T Y      W P +P D         E C  
Sbjct: 205 QKYL--GSAYTWMGLSDPEGA--WKWVDGTDYATGFQNWKPGQPDDWQGHGLGGGEDCA- 259

Query: 134 LNFRKSPKRWGWNDVNCLGPQRSVCE 159
            +F    +   WND  C  P   VCE
Sbjct: 260 -HFHPDGR---WNDDVCQRPYHWVCE 281


>gi|33667103 C-type lectin, superfamily member 14 isoform 1 [Homo
           sapiens]
          Length = 316

 Score = 98.2 bits (243), Expect = 3e-21
 Identities = 57/143 (39%), Positives = 76/143 (53%), Gaps = 17/143 (11%)

Query: 25  SSAETAWSCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQN 84
           ++A T  +CCP NW     +CY+ S    SW ++EK C    AHL+VIN++EEQ+F+ + 
Sbjct: 172 NNASTEGTCCPVNWVEHQDSCYWFSHSGMSWAEAEKYCQLKNAHLVVINSREEQNFVQKY 231

Query: 85  LQEESAY-FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD-------PNERCVVLNF 136
           L   SAY ++GLSDPEG   W+WVD T Y      W P +P D         E C   +F
Sbjct: 232 L--GSAYTWMGLSDPEGA--WKWVDGTDYATGFQNWKPGQPDDWQGHGLGGGEDCA--HF 285

Query: 137 RKSPKRWGWNDVNCLGPQRSVCE 159
               +   WND  C  P   VCE
Sbjct: 286 HPDGR---WNDDVCQRPYHWVCE 305


>gi|223278347 C-type lectin domain family 4, member M isoform 9
           [Homo sapiens]
          Length = 353

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CPK+W  F  NCYF+S    +W DS   C  + A L+VI T EEQ+F+  Q  +     +
Sbjct: 222 CPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSW 281

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDP-NERCVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P + S   +W+  EP++  NE C    F  S    GWND  C
Sbjct: 282 MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCA--EFSGS----GWNDNRC 335


>gi|223278339 C-type lectin domain family 4, member M isoform 7
           [Homo sapiens]
          Length = 263

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CPK+W  F  NCYF+S    +W DS   C  + A L+VI T EEQ+F+  Q  +     +
Sbjct: 132 CPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSW 191

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDP-NERCVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P + S   +W+  EP++  NE C    F  S    GWND  C
Sbjct: 192 MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCA--EFSGS----GWNDNRC 245


>gi|223278337 C-type lectin domain family 4, member M isoform 12
           [Homo sapiens]
          Length = 375

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CPK+W  F  NCYF+S    +W DS   C  + A L+VI T EEQ+F+  Q  +     +
Sbjct: 244 CPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSW 303

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDP-NERCVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P + S   +W+  EP++  NE C    F  S    GWND  C
Sbjct: 304 MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCA--EFSGS----GWNDNRC 357


>gi|223278335 C-type lectin domain family 4, member M isoform 2
           [Homo sapiens]
          Length = 348

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CPK+W  F  NCYF+S    +W DS   C  + A L+VI T EEQ+F+  Q  +     +
Sbjct: 217 CPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSW 276

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDP-NERCVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P + S   +W+  EP++  NE C    F  S    GWND  C
Sbjct: 277 MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCA--EFSGS----GWNDNRC 330


>gi|223278350 C-type lectin domain family 4, member M isoform 8
           [Homo sapiens]
          Length = 376

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CPK+W  F  NCYF+S    +W DS   C  + A L+VI T EEQ+F+  Q  +     +
Sbjct: 245 CPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSW 304

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDP-NERCVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P + S   +W+  EP++  NE C    F  S    GWND  C
Sbjct: 305 MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCA--EFSGS----GWNDNRC 358


>gi|223278342 C-type lectin domain family 4, member M isoform 11
           [Homo sapiens]
          Length = 332

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CPK+W  F  NCYF+S    +W DS   C  + A L+VI T EEQ+F+  Q  +     +
Sbjct: 201 CPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSW 260

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDP-NERCVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P + S   +W+  EP++  NE C    F  S    GWND  C
Sbjct: 261 MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCA--EFSGS----GWNDNRC 314


>gi|42542390 C-type lectin domain family 4, member M isoform 1 [Homo
           sapiens]
          Length = 399

 Score = 89.0 bits (219), Expect = 2e-18
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CPK+W  F  NCYF+S    +W DS   C  + A L+VI T EEQ+F+  Q  +     +
Sbjct: 268 CPKDWTFFQGNCYFMSNSQRNWHDSVTACQEVRAQLVVIKTAEEQNFLQLQTSRSNRFSW 327

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDP-NERCVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P + S   +W+  EP++  NE C    F  S    GWND  C
Sbjct: 328 MGLSDLNQEGTWQWVDGSPLSPSFQRYWNSGEPNNSGNEDCA--EFSGS----GWNDNRC 381


>gi|18426877 asialoglycoprotein receptor 2 isoform c [Homo sapiens]
          Length = 292

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 32  SCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESAY 91
           +CCP NW     +CY+ S    +W ++EK C    AHL+VIN+ EEQ FI Q+    + +
Sbjct: 156 TCCPVNWVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTW 215

Query: 92  FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD-------PNERCVVLNFRKSPKRWG 144
            +GL+D +G   W+WVD T Y  +   W   +P +        +E CV +          
Sbjct: 216 -IGLTDSDGS--WKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQ-----PDGR 267

Query: 145 WNDVNCLGPQRSVCE 159
           WND  CL   R VCE
Sbjct: 268 WNDDFCLQVYRWVCE 282


>gi|18426875 asialoglycoprotein receptor 2 isoform b [Homo sapiens]
          Length = 287

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 32  SCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESAY 91
           +CCP NW     +CY+ S    +W ++EK C    AHL+VIN+ EEQ FI Q+    + +
Sbjct: 151 TCCPVNWVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTW 210

Query: 92  FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD-------PNERCVVLNFRKSPKRWG 144
            +GL+D +G   W+WVD T Y  +   W   +P +        +E CV +          
Sbjct: 211 -IGLTDSDGS--WKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQ-----PDGR 262

Query: 145 WNDVNCLGPQRSVCE 159
           WND  CL   R VCE
Sbjct: 263 WNDDFCLQVYRWVCE 277


>gi|18426873 asialoglycoprotein receptor 2 isoform a [Homo sapiens]
          Length = 311

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 32  SCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESAY 91
           +CCP NW     +CY+ S    +W ++EK C    AHL+VIN+ EEQ FI Q+    + +
Sbjct: 175 TCCPVNWVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTW 234

Query: 92  FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD-------PNERCVVLNFRKSPKRWG 144
            +GL+D +G   W+WVD T Y  +   W   +P +        +E CV +          
Sbjct: 235 -IGLTDSDGS--WKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQ-----PDGR 286

Query: 145 WNDVNCLGPQRSVCE 159
           WND  CL   R VCE
Sbjct: 287 WNDDFCLQVYRWVCE 301


>gi|4502253 asialoglycoprotein receptor 2 isoform a [Homo sapiens]
          Length = 311

 Score = 86.3 bits (212), Expect = 1e-17
 Identities = 48/135 (35%), Positives = 68/135 (50%), Gaps = 15/135 (11%)

Query: 32  SCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESAY 91
           +CCP NW     +CY+ S    +W ++EK C    AHL+VIN+ EEQ FI Q+    + +
Sbjct: 175 TCCPVNWVEHQGSCYWFSHSGKAWAEAEKYCQLENAHLVVINSWEEQKFIVQHTNPFNTW 234

Query: 92  FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD-------PNERCVVLNFRKSPKRWG 144
            +GL+D +G   W+WVD T Y  +   W   +P +        +E CV +          
Sbjct: 235 -IGLTDSDGS--WKWVDGTDYRHNYKNWAVTQPDNWHGHELGGSEDCVEVQ-----PDGR 286

Query: 145 WNDVNCLGPQRSVCE 159
           WND  CL   R VCE
Sbjct: 287 WNDDFCLQVYRWVCE 301


>gi|18641360 collectin sub-family member 12 [Homo sapiens]
          Length = 742

 Score = 84.0 bits (206), Expect = 6e-17
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 13/132 (9%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESAYFV 93
           CP +WK+F+  CY+ S E   ++D++  C    +HL+ INT+EEQ +I + +    ++++
Sbjct: 607 CPPHWKNFTDKCYYFSVEKEIFEDAKLFCEDKSSHLVFINTREEQQWIKKQMVGRESHWI 666

Query: 94  GLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD------PNERCVVLNFRKSPKRWGWND 147
           GL+D E +  W+W+D T  +  +  W   +P +      P E C  L +        WND
Sbjct: 667 GLTDSERENEWKWLDGTSPDYKN--WKAGQPDNWGHGHGPGEDCAGLIYAGQ-----WND 719

Query: 148 VNCLGPQRSVCE 159
             C      +CE
Sbjct: 720 FQCEDVNNFICE 731


>gi|4502251 asialoglycoprotein receptor 1 [Homo sapiens]
          Length = 291

 Score = 83.6 bits (205), Expect = 7e-17
 Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 15/135 (11%)

Query: 32  SCCPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFIFQNLQEESAY 91
           +CCP NW     +CY+ S    +W D++  C   +AHL+V+ + EEQ F+  ++   + +
Sbjct: 152 TCCPVNWVEHERSCYWFSRSGKAWADADNYCRLEDAHLVVVTSWEEQKFVQHHIGPVNTW 211

Query: 92  FVGLSDPEGQRHWQWVDQTPYNESSTFWHPREPSD-------PNERCVVLNFRKSPKRWG 144
            +GL D  G   W+WVD T Y      W P +P D         E C   +F    +   
Sbjct: 212 -MGLHDQNGP--WKWVDGTDYETGFKNWRPEQPDDWYGHGLGGGEDCA--HFTDDGR--- 263

Query: 145 WNDVNCLGPQRSVCE 159
           WND  C  P R VCE
Sbjct: 264 WNDDVCQRPYRWVCE 278


>gi|223029517 CD209 molecule isoform 8 [Homo sapiens]
          Length = 243

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CP  W  F  NCYF+S    +W DS   C  + A L+VI + EEQ+F+  Q+ +     +
Sbjct: 95  CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTW 154

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDPNER-CVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P   S   +W+  EP++  E  C   +        GWND  C
Sbjct: 155 MGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN------GWNDDKC 208


>gi|223029386 CD209 molecule isoform 3 [Homo sapiens]
          Length = 380

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CP  W  F  NCYF+S    +W DS   C  + A L+VI + EEQ+F+  Q+ +     +
Sbjct: 232 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTW 291

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDPNER-CVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P   S   +W+  EP++  E  C   +        GWND  C
Sbjct: 292 MGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN------GWNDDKC 345


>gi|223029384 CD209 molecule isoform 7 [Homo sapiens]
          Length = 312

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CP  W  F  NCYF+S    +W DS   C  + A L+VI + EEQ+F+  Q+ +     +
Sbjct: 164 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTW 223

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDPNER-CVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P   S   +W+  EP++  E  C   +        GWND  C
Sbjct: 224 MGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN------GWNDDKC 277


>gi|223029382 CD209 molecule isoform 6 [Homo sapiens]
          Length = 360

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CP  W  F  NCYF+S    +W DS   C  + A L+VI + EEQ+F+  Q+ +     +
Sbjct: 212 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTW 271

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDPNER-CVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P   S   +W+  EP++  E  C   +        GWND  C
Sbjct: 272 MGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN------GWNDDKC 325


>gi|223029380 CD209 molecule isoform 5 [Homo sapiens]
          Length = 268

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CP  W  F  NCYF+S    +W DS   C  + A L+VI + EEQ+F+  Q+ +     +
Sbjct: 120 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTW 179

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDPNER-CVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P   S   +W+  EP++  E  C   +        GWND  C
Sbjct: 180 MGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN------GWNDDKC 233


>gi|10863957 CD209 molecule isoform 1 [Homo sapiens]
          Length = 404

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 43/120 (35%), Positives = 61/120 (50%), Gaps = 9/120 (7%)

Query: 34  CPKNWKSFSSNCYFISTESASWQDSEKDCARMEAHLLVINTQEEQDFI-FQNLQEESAYF 92
           CP  W  F  NCYF+S    +W DS   C  + A L+VI + EEQ+F+  Q+ +     +
Sbjct: 256 CPWEWTFFQGNCYFMSNSQRNWHDSITACKEVGAQLVVIKSAEEQNFLQLQSSRSNRFTW 315

Query: 93  VGLSDPEGQRHWQWVDQTPYNES-STFWHPREPSDPNER-CVVLNFRKSPKRWGWNDVNC 150
           +GLSD   +  WQWVD +P   S   +W+  EP++  E  C   +        GWND  C
Sbjct: 316 MGLSDLNQEGTWQWVDGSPLLPSFKQYWNRGEPNNVGEEDCAEFSGN------GWNDDKC 369


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.128    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,935,331
Number of Sequences: 37866
Number of extensions: 309929
Number of successful extensions: 1013
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 747
Number of HSP's gapped (non-prelim): 206
length of query: 165
length of database: 18,247,518
effective HSP length: 94
effective length of query: 71
effective length of database: 14,688,114
effective search space: 1042856094
effective search space used: 1042856094
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press