Search of human proteins with 122939161

Search of human proteins with 122939161

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|122939161 peptidyl arginine deiminase, type III [Homo
sapiens]
         (664 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|122939161 peptidyl arginine deiminase, type III [Homo sapiens]    1385   0.0  
gi|122056685 peptidylarginine deiminase type I [Homo sapiens]         753   0.0  
gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens]      721   0.0  
gi|122939159 peptidyl arginine deiminase, type II [Homo sapiens]      688   0.0  
gi|117414158 peptidylarginine deiminase type 6 [Homo sapiens]         557   e-158
gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo s...    31   4.2  

>gi|122939161 peptidyl arginine deiminase, type III [Homo sapiens]
          Length = 664

 Score = 1385 bits (3585), Expect = 0.0
 Identities = 664/664 (100%), Positives = 664/664 (100%)

Query: 1   MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYGTPGVDIYISPNMERGR 60
           MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYGTPGVDIYISPNMERGR
Sbjct: 1   MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYGTPGVDIYISPNMERGR 60

Query: 61  ERADTRRWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEPLPLAYAVLYLTCVDISLD 120
           ERADTRRWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEPLPLAYAVLYLTCVDISLD
Sbjct: 61  ERADTRRWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEPLPLAYAVLYLTCVDISLD 120

Query: 121 CDLNCEGRQDRNFVDKRQWVWGPSGYGGILLVNCDRDDPSCDVQDNCDQHVHCLQDLEDM 180
           CDLNCEGRQDRNFVDKRQWVWGPSGYGGILLVNCDRDDPSCDVQDNCDQHVHCLQDLEDM
Sbjct: 121 CDLNCEGRQDRNFVDKRQWVWGPSGYGGILLVNCDRDDPSCDVQDNCDQHVHCLQDLEDM 180

Query: 181 SVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICGPEDVCEAYRHVLGQDKVSYEVP 240
           SVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICGPEDVCEAYRHVLGQDKVSYEVP
Sbjct: 181 SVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICGPEDVCEAYRHVLGQDKVSYEVP 240

Query: 241 RLHGDEERFFVEGLSFPDAGFTGLISFHVTLLDDSNEDFSASPIFTDTVVFRVAPWIMTP 300
           RLHGDEERFFVEGLSFPDAGFTGLISFHVTLLDDSNEDFSASPIFTDTVVFRVAPWIMTP
Sbjct: 241 RLHGDEERFFVEGLSFPDAGFTGLISFHVTLLDDSNEDFSASPIFTDTVVFRVAPWIMTP 300

Query: 301 STLPPLEVYVCRVRNNTCFVDAVAELARKAGCKLTICPQAENRNDRWIQDEMELGYVQAP 360
           STLPPLEVYVCRVRNNTCFVDAVAELARKAGCKLTICPQAENRNDRWIQDEMELGYVQAP
Sbjct: 301 STLPPLEVYVCRVRNNTCFVDAVAELARKAGCKLTICPQAENRNDRWIQDEMELGYVQAP 360

Query: 361 HKTLPVVFDSPRNGELQDFPYKRILGPDFGYVTREPRDRSVSGLDSFGNLEVSPPVVANG 420
           HKTLPVVFDSPRNGELQDFPYKRILGPDFGYVTREPRDRSVSGLDSFGNLEVSPPVVANG
Sbjct: 361 HKTLPVVFDSPRNGELQDFPYKRILGPDFGYVTREPRDRSVSGLDSFGNLEVSPPVVANG 420

Query: 421 KEYPLGRILIGGNLPGSSGRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFLSFVPA 480
           KEYPLGRILIGGNLPGSSGRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFLSFVPA
Sbjct: 421 KEYPLGRILIGGNLPGSSGRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFLSFVPA 480

Query: 481 PDGKGFRMLLASPGACFKLFQEKQKCGHGRALLFQGVVDDEQVKTISINQVLSNKDLINY 540
           PDGKGFRMLLASPGACFKLFQEKQKCGHGRALLFQGVVDDEQVKTISINQVLSNKDLINY
Sbjct: 481 PDGKGFRMLLASPGACFKLFQEKQKCGHGRALLFQGVVDDEQVKTISINQVLSNKDLINY 540

Query: 541 NKFVQSCIDWNREVLKRELGLAECDIIDIPQLFKTERKKATAFFPDLVNMLVLGKHLGIP 600
           NKFVQSCIDWNREVLKRELGLAECDIIDIPQLFKTERKKATAFFPDLVNMLVLGKHLGIP
Sbjct: 541 NKFVQSCIDWNREVLKRELGLAECDIIDIPQLFKTERKKATAFFPDLVNMLVLGKHLGIP 600

Query: 601 KPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVCRKPFSFKWW 660
           KPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVCRKPFSFKWW
Sbjct: 601 KPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVCRKPFSFKWW 660

Query: 661 NMVP 664
           NMVP
Sbjct: 661 NMVP 664


>gi|122056685 peptidylarginine deiminase type I [Homo sapiens]
          Length = 663

 Score =  753 bits (1943), Expect = 0.0
 Identities = 385/669 (57%), Positives = 473/669 (70%), Gaps = 11/669 (1%)

Query: 1   MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYGTPGVDIYISPNMERGR 60
           M+ +R+V++SL+ PT AVCV GVE  VDI+  VP+G   F V G+ GV++++  N  R +
Sbjct: 1   MAPKRVVQLSLKMPTHAVCVVGVEAHVDIHSDVPKGANSFRVSGSSGVEVFMVYNRTRVK 60

Query: 61  ERADTRRWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEPLPLAYAVLYLTCVDISLD 120
           E     RW  D   +++V + + S +L D  V++SY    E   L  +VLYLT VDISL+
Sbjct: 61  EPIGKARWPLDTDADMVVSVGTASKELKDFKVRVSYFGEQEDQALGRSVLYLTGVDISLE 120

Query: 121 CDLNCEGRQDRNFVDKRQWVWGPSGYGGILLVNCDRDDPSCDVQDNCDQHVHCLQDLEDM 180
            D    G+  R+  DK+ W WGP GYG ILLVNCDRD+      D     +  L DL+DM
Sbjct: 121 VDTGRTGKVKRSQGDKKTWRWGPEGYGAILLVNCDRDNHRSAEPDLTHSWLMSLADLQDM 180

Query: 181 SVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICGPEDVCEAYRHVLGQDKVSYEVP 240
           S M+L   GP  LFD HKLVL+    D+KR +VF   G   + + Y+ VLG   +SYEV 
Sbjct: 181 SPMLLSCNGPDKLFDSHKLVLNVPFSDSKRVRVFCARGGNSLSD-YKQVLGPQCLSYEVE 239

Query: 241 RLHGDEE-RFFVEGLSFPDAGFTGLISFHVTLLDDSNEDFSASPIFTDTVVFRVAPWIMT 299
           R  G++E +F+VEGL+FPDA F GL+S  V+L+D          +FTDTV FR+APWIMT
Sbjct: 240 RQPGEQEIKFYVEGLTFPDADFLGLVSLSVSLVDPGT--LPEVTLFTDTVGFRMAPWIMT 297

Query: 300 PSTLPPLEVYVCRVRN----NTCFVDAVAELARKAGCKLTICPQAENRNDRWIQDEMELG 355
           P+T PP E+YVCRV +    N  F++ ++ L  KA CKLTICPQ ENRNDRWIQDEME G
Sbjct: 298 PNTQPPEELYVCRVMDTHGSNEKFLEDMSYLTLKANCKLTICPQVENRNDRWIQDEMEFG 357

Query: 356 YVQAPHKTLPVVFDSPRNGELQDFPYKRILGPDFGYVTREPRDRSVSGLDSFGNLEVSPP 415
           Y++APHK+ PVVFDSPRN  L+DFPYKRILGPDFGYVTRE      S LDSFGNL+VSPP
Sbjct: 358 YIEAPHKSFPVVFDSPRNRGLKDFPYKRILGPDFGYVTREIPLPGPSSLDSFGNLDVSPP 417

Query: 416 VVANGKEYPLGRILIGGNLPGSSGRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFL 475
           V   G EYPLGRILIG + P S GR++ + VR+FL AQ+VQ PVEL+ DWL+VGHVDEFL
Sbjct: 418 VTVGGTEYPLGRILIGSSFPKSGGRQMARAVRNFLKAQQVQAPVELYSDWLSVGHVDEFL 477

Query: 476 SFVPAPDGKGFRMLLASPGACFKLFQEKQKCGHGRALLFQGVVDDEQVKTISINQVLSNK 535
           +FVP  D KGFR+LLASP AC KLFQEK++ G+G A  F G+    Q K  SIN++L+++
Sbjct: 478 TFVPTSDQKGFRLLLASPSACLKLFQEKKEEGYGEAAQFDGL--KHQAKR-SINEMLADR 534

Query: 536 DLINYNKFVQSCIDWNREVLKRELGLAECDIIDIPQLFKTERKKATAFFPDLVNMLVLGK 595
            L   N   Q CIDWNR VLKRELGLAE DI+DIPQLF  +   A AFFPD+VNM+VLGK
Sbjct: 535 HLQRDNLHAQKCIDWNRNVLKRELGLAESDIVDIPQLFFLKNFYAEAFFPDMVNMVVLGK 594

Query: 596 HLGIPKPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVCRKPF 655
           +LGIPKP+GPIING CCLEEKV+SLLEPLGLHC FIDD+  YH L GE+HCGTNV RKPF
Sbjct: 595 YLGIPKPYGPIINGRCCLEEKVQSLLEPLGLHCIFIDDYLSYHELQGEIHCGTNVRRKPF 654

Query: 656 SFKWWNMVP 664
            FKWWNMVP
Sbjct: 655 PFKWWNMVP 663


>gi|216548487 peptidyl arginine deiminase, type IV [Homo sapiens]
          Length = 663

 Score =  721 bits (1861), Expect = 0.0
 Identities = 374/669 (55%), Positives = 461/669 (68%), Gaps = 11/669 (1%)

Query: 1   MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYGTPGVDIYISPNMERGR 60
           M+   ++RV+ E PT AVCV G  T +DI  S PE    F +  +PGV + I+      +
Sbjct: 1   MAQGTLIRVTPEQPTHAVCVLGTLTQLDICSSAPEDCTSFSINASPGVVVDIAHGPPAKK 60

Query: 61  ERADTRRWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEPLPLAYAVLYLTCVDISLD 120
           +   +  W  D  +E+ + M   S    D  VQISY+    P P+  A+LYLT V+ISL 
Sbjct: 61  KSTGSSTWPLDPGVEVTLTMKVASGSTGDQKVQISYYGPKTP-PVK-ALLYLTGVEISLC 118

Query: 121 CDLNCEGR--QDRNFVDKRQWVWGPSGYGGILLVNCDRDDPSCDVQDNCDQHVHCLQDLE 178
            D+   G+    R   D+R W WGP G G ILLVNCDRD+      D  D  V   +DL+
Sbjct: 119 ADITRTGKVKPTRAVKDQRTWTWGPCGQGAILLVNCDRDNLESSAMDCEDDEVLDSEDLQ 178

Query: 179 DMSVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICGPEDVCEAYRHVLGQDKVSYE 238
           DMS+M L T+ P   F +H LVLH +  +  + +VF     + +      VLG    S+ 
Sbjct: 179 DMSLMTLSTKTPKDFFTNHTLVLHVARSEMDKVRVFQATRGK-LSSKCSVVLGPKWPSHY 237

Query: 239 VPRLHGDEER-FFVEGLSFPDAGFTGLISFHVTLLDDSNEDFSASPIFTDTVVFRVAPWI 297
           +    G     F+VE L+FPD  F GLI+  ++LLD SN +   + +F D+VVFRVAPWI
Sbjct: 238 LMVPGGKHNMDFYVEALAFPDTDFPGLITLTISLLDTSNLELPEAVVFQDSVVFRVAPWI 297

Query: 298 MTPSTLPPLEVYVCRVRNNTCFVDAVAELARKAGCKLTICPQAENRNDRWIQDEMELGYV 357
           MTP+T PP EVY C +  N  F+ +V  LA KA CKLTICP+ EN +D+W+QDEME+GY+
Sbjct: 298 MTPNTQPPQEVYACSIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYI 357

Query: 358 QAPHKTLPVVFDSPRNGELQDFPYKRILGPDFGYVTREPRDRSVSGLDSFGNLEVSPPVV 417
           QAPHKTLPVVFDSPRN  L++FP KR++GPDFGYVTR P+   +SGLDSFGNLEVSPPV 
Sbjct: 358 QAPHKTLPVVFDSPRNRGLKEFPIKRVMGPDFGYVTRGPQTGGISGLDSFGNLEVSPPVT 417

Query: 418 ANGKEYPLGRILIGGN-LPGSSGRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFLS 476
             GKEYPLGRIL G +  P +  R++ Q ++DFL AQ+VQ PV+L+ DWL+VGHVDEFLS
Sbjct: 418 VRGKEYPLGRILFGDSCYPSNDSRQMHQALQDFLSAQQVQAPVKLYSDWLSVGHVDEFLS 477

Query: 477 FVPAPDGKGFRMLLASPGACFKLFQEKQKCGHGRALLFQGVVDDEQVKTISINQVLSNKD 536
           FVPAPD KGFR+LLASP +C+KLFQE+Q  GHG ALLF+G+   +Q K   I  +LSNK 
Sbjct: 478 FVPAPDRKGFRLLLASPRSCYKLFQEQQNEGHGEALLFEGIKKKKQQK---IKNILSNKT 534

Query: 537 LINYNKFVQSCIDWNREVLKRELGLAECDIIDIPQLFK-TERKKATAFFPDLVNMLVLGK 595
           L  +N FV+ CIDWNRE+LKRELGLAE DIIDIPQLFK  E  KA AFFP++VNMLVLGK
Sbjct: 535 LREHNSFVERCIDWNRELLKRELGLAESDIIDIPQLFKLKEFSKAEAFFPNMVNMLVLGK 594

Query: 596 HLGIPKPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVCRKPF 655
           HLGIPKPFGP+ING CCLEEKV SLLEPLGL CTFI+DF  YH+ HGEVHCGTNV RKPF
Sbjct: 595 HLGIPKPFGPVINGRCCLEEKVCSLLEPLGLQCTFINDFFTYHIRHGEVHCGTNVRRKPF 654

Query: 656 SFKWWNMVP 664
           SFKWWNMVP
Sbjct: 655 SFKWWNMVP 663


>gi|122939159 peptidyl arginine deiminase, type II [Homo sapiens]
          Length = 665

 Score =  688 bits (1775), Expect = 0.0
 Identities = 345/667 (51%), Positives = 452/667 (67%), Gaps = 5/667 (0%)

Query: 1   MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYGTPGVDIYISPNMERGR 60
           M  +R VR+       AV V G     D+Y + P G + F +  +  V + +  + E   
Sbjct: 1   MLRERTVRLQYGSRVEAVYVLGTYLWTDVYSAAPAGAQTFSLKHSEHVWVEVVRDGEAEE 60

Query: 61  ERADTR-RWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEPLPLAYAVLYLTCVDISL 119
              + + RW    +  + V M+  S + +   V ++Y+     +P+  A L+LT ++ISL
Sbjct: 61  VATNGKQRWLLSPSTTLRVTMSQASTEASSDKVTVNYYDEEGSIPIDQAGLFLTAIEISL 120

Query: 120 DCDLNCEGRQDRNFVDKRQWVWGPSGYGGILLVNCDRDDPSCDVQDNCDQHVHCLQDLED 179
           D D + +G  ++N   K  W WGP G G ILLVNCDR+ P    +D  D+ V+  +DL+D
Sbjct: 121 DVDADRDGVVEKNNPKKASWTWGPEGQGAILLVNCDRETPWLPKEDCRDEKVYSKEDLKD 180

Query: 180 MSVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICGPEDVCEAYRHVLGQDKVSYEV 239
           MS M+LRT+GP  L   +++VL+ S  D+ +  VF++  P    + Y H+LG+ K+ + V
Sbjct: 181 MSQMILRTKGPDRLPAGYEIVLYISMSDSDKVGVFYVENPF-FGQRYIHILGRRKLYHVV 239

Query: 240 PRLHGDEER-FFVEGLSFPDAGFTGLISFHVTLLDDSNEDFSASPIFTDTVVFRVAPWIM 298
               G  E  FFVEGL FPD GF+GL+S HV+LL+   +D   +PIFTDTV+FR+APWIM
Sbjct: 240 KYTGGSAELLFFVEGLCFPDEGFSGLVSIHVSLLEYMAQDIPLTPIFTDTVIFRIAPWIM 299

Query: 299 TPSTLPPLEVYVCRVRNNTCFVDAVAELARKAGCKLTICPQAENRNDRWIQDEMELGYVQ 358
           TP+ LPP+ V+VC +++N  F+  V  L  K  C+L +C Q  NR DRWIQDE+E GY++
Sbjct: 300 TPNILPPVSVFVCCMKDNYLFLKEVKNLVEKTNCELKVCFQYLNRGDRWIQDEIEFGYIE 359

Query: 359 APHKTLPVVFDSPRNGELQDFPYKRILGPDFGYVTREPRDRSVSGLDSFGNLEVSPPVVA 418
           APHK  PVV DSPR+G L+DFP K +LGPDFGYVTREP   SV+ LDSFGNLEVSPPV  
Sbjct: 360 APHKGFPVVLDSPRDGNLKDFPVKELLGPDFGYVTREPLFESVTSLDSFGNLEVSPPVTV 419

Query: 419 NGKEYPLGRILIGGNLPGSSGRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFLSFV 478
           NGK YPLGRILIG + P S GRR+T+VVRDFL AQ+VQ PVEL+ DWL VGHVDEF+SFV
Sbjct: 420 NGKTYPLGRILIGSSFPLSGGRRMTKVVRDFLKAQQVQAPVELYSDWLTVGHVDEFMSFV 479

Query: 479 PAPDGKGFRMLLASPGACFKLFQEKQKCGHGRALLFQGVVDDEQVKTISINQVLSNKDLI 538
           P P  K F +L+AS  AC+KLF+EKQK GHG A++F+G +     K I+IN++LSN+ L+
Sbjct: 480 PIPGTKKFLLLMASTSACYKLFREKQKDGHGEAIMFKG-LGGMSSKRITINKILSNESLV 538

Query: 539 NYNKFVQSCIDWNREVLKRELGLAECDIIDIPQLFK-TERKKATAFFPDLVNMLVLGKHL 597
             N + Q C+DWNR++LK+ELGL E DIID+P LFK  E  +A AFFP++VNM+VL K L
Sbjct: 539 QENLYFQRCLDWNRDILKKELGLTEQDIIDLPALFKMDEDHRARAFFPNMVNMIVLDKDL 598

Query: 598 GIPKPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFTPYHMLHGEVHCGTNVCRKPFSF 657
           GIPKPFGP +   CCLE  VR LLEPLGL CTFIDD + YH   GEVHCGTNV RKPF+F
Sbjct: 599 GIPKPFGPQVEEECCLEMHVRGLLEPLGLECTFIDDISAYHKFLGEVHCGTNVRRKPFTF 658

Query: 658 KWWNMVP 664
           KWW+MVP
Sbjct: 659 KWWHMVP 665


>gi|117414158 peptidylarginine deiminase type 6 [Homo sapiens]
          Length = 694

 Score =  557 bits (1436), Expect = e-158
 Identities = 297/689 (43%), Positives = 432/689 (62%), Gaps = 28/689 (4%)

Query: 1   MSLQRIVRVSLEHPTSAVCVAGVETLVDIYGSVPEGTEMFEVYGTPGVDIYISPNMERGR 60
           MS Q I+ +SL+ P  AVCV G E  +D+ G  P+  + F ++G+  V I ++  +   +
Sbjct: 9   MSFQSIIHLSLDSPVHAVCVLGTEICLDLSGCAPQKCQCFTIHGSGRVLIDVANTVISEK 68

Query: 61  ERADTRRWRFDATLEIIVVMNSPSNDLNDSHVQISYHSSHEPLPLAYAVLYLTCVDISLD 120
           E A T  W         V M SPS  ++   V ++Y+  +E  P+  AVLYLT +++SL+
Sbjct: 69  EDA-TIWWPLSDPTYATVKMTSPSPSVDADKVSVTYYGPNEDAPVGTAVLYLTGIEVSLE 127

Query: 121 CDLNCEGRQDRNFVD--KRQWVWGPSGYGGILLVNCDRDDPSCDVQDNCDQHVHCLQDLE 178
            D+   G+ + +     K++W+WGPSG+G ILLVNC+  D    ++D   + V   +++ 
Sbjct: 128 VDIYRNGQVEMSSDKQAKKKWIWGPSGWGAILLVNCNPADVGQQLEDKKTKKVIFSEEIT 187

Query: 179 DMSVMVLRTQGPAALFDDHKLVLHTSSYDAKRAQVFHICGPEDVCEAYRHVLGQDKVSYE 238
           ++S M L  QGP+ +   ++LVLHTS  ++K+A+V+     +D    +  VLG D+ +Y 
Sbjct: 188 NLSQMTLNVQGPSCILKKYRLVLHTSKEESKKARVYW--PQKDNSSTFELVLGPDQHAYT 245

Query: 239 VPRLHGD-EERFFVEGLSFPDAGFTGLISFHVTLLDDSNE-DFSASPIFTDTVVFRVAPW 296
           +  L    +E F+VE ++FP A F+GLIS+ V+L+++S +     + ++ DTVVFRVAP 
Sbjct: 246 LALLGNHLKETFYVEAIAFPSAEFSGLISYSVSLVEESQDPSIPETVLYKDTVVFRVAPC 305

Query: 297 IMTPSTLPPLEVYVCRVRNNTCFVDAVAELARKAGCKLTICPQAENRNDRWIQDEMELGY 356
           +  P T  PLEVY+CR      FVD V +L+ K+  ++    +  NR  RW+QDEM   Y
Sbjct: 306 VFIPCTQVPLEVYLCRELQLQGFVDTVTKLSEKSNSQVASVYEDPNRLGRWLQDEMAFCY 365

Query: 357 VQAPHKTLPVVFDSPRNGELQDFPYKRILGPDFGYVTREPRDRSVSGLDSFGNLEVSPPV 416
            QAPHKT  ++ D+P+  +L +FP K  L P  GY+ ++  D  V+ +DS GNL VSPPV
Sbjct: 366 TQAPHKTTSLILDTPQAADLDEFPMKYSLSPGIGYMIQDTEDHKVASMDSIGNLMVSPPV 425

Query: 417 VANGKEYPLGRILIGGNL-PGSSGRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFL 475
              GKEYPLGR+LIG +  P + GR +++ +RDFL+AQ+VQ PVEL+ DWL  GHVDEF+
Sbjct: 426 KVQGKEYPLGRVLIGSSFYPSAEGRAMSKTLRDFLYAQQVQAPVELYSDWLMTGHVDEFM 485

Query: 476 SFVPAPD----GKGFRMLLASPGACFKLFQEKQKCGHGRALLFQGVVDDEQV----KTIS 527
            F+P  D     KGF +LLASP AC+KLF+EKQK G+G ALLF  +  D+ +    +  +
Sbjct: 486 CFIPTDDKNEGKKGFLLLLASPSACYKLFREKQKEGYGDALLFDELRADQLLSNGREAKT 545

Query: 528 INQVLSNKDLINYNKFVQSCIDWNREVLKRELGLAECDIIDIPQLF------------KT 575
           I+Q+L+++ L   N++V+ CI  NR++LK ELGL E DII+IPQLF            + 
Sbjct: 546 IDQLLADESLKKQNEYVEKCIHLNRDILKTELGLVEQDIIEIPQLFCLEKLTNIPSDQQP 605

Query: 576 ERKKATAFFPDLVNMLVLGKHLGIPKPFGPIINGCCCLEEKVRSLLEPLGLHCTFIDDFT 635
           +R  A  +FPDL+ M+V+GK+LGIPKPFGP I G CCLEEK+  LLEPLG  CTFI+DF 
Sbjct: 606 KRSFARPYFPDLLRMIVMGKNLGIPKPFGPQIKGTCCLEEKICCLLEPLGFKCTFINDFD 665

Query: 636 PYHMLHGEVHCGTNVCRKPFSFKWWNMVP 664
            Y    G++    N+ R PF+FKWW MVP
Sbjct: 666 CYLTEVGDICACANIRRVPFAFKWWKMVP 694


>gi|116734710 ATP-binding cassette, sub-family A member 3 [Homo
            sapiens]
          Length = 1704

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 11/71 (15%)

Query: 426  GRILIGGNLPGSS--GRRVTQVVRDFLHAQKVQPPVELFVDWLAVGHVDEFLSFVPAPDG 483
            GR ++  ++PG+S  G+++++ ++D L A+  +P   L       G ++EFL F  + +G
Sbjct: 964  GRTVVPFSVPGTSQLGQQLSEHLKDALQAEGQEPREVL-------GDLEEFLIFRASVEG 1016

Query: 484  KGF--RMLLAS 492
             GF  R L+A+
Sbjct: 1017 GGFNERCLVAA 1027


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.141    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,283,074
Number of Sequences: 37866
Number of extensions: 1363868
Number of successful extensions: 2300
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2272
Number of HSP's gapped (non-prelim): 6
length of query: 664
length of database: 18,247,518
effective HSP length: 109
effective length of query: 555
effective length of database: 14,120,124
effective search space: 7836668820
effective search space used: 7836668820
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.