Search of human proteins with 32698938

Search of human proteins with 32698938

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32698938 cornichon homolog 2 [Homo sapiens]
         (160 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|32698938 cornichon homolog 2 [Homo sapiens]                        338   1e-93
gi|22749039 cornichon homolog 3 [Homo sapiens]                        285   1e-77
gi|5031639 cornichon-like [Homo sapiens]                              222   9e-59
gi|7661824 cornichon homolog 4 [Homo sapiens]                          79   1e-15
gi|160707881 formin 2 [Homo sapiens]                                   30   1.2  
gi|52421343 olfactory receptor, family 52, subfamily A, member 4...    28   2.6  
gi|187828357 SMAD family member 9 isoform a [Homo sapiens]             28   4.4  

>gi|32698938 cornichon homolog 2 [Homo sapiens]
          Length = 160

 Score =  338 bits (867), Expect = 1e-93
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERI 60
           MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERI
Sbjct: 1   MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERI 60

Query: 61  CCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAV 120
           CCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAV
Sbjct: 61  CCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAV 120

Query: 121 SIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVSF 160
           SIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVSF
Sbjct: 121 SIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVSF 160


>gi|22749039 cornichon homolog 3 [Homo sapiens]
          Length = 160

 Score =  285 bits (729), Expect = 1e-77
 Identities = 130/159 (81%), Positives = 143/159 (89%)

Query: 1   MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERI 60
           MAFTFAAFCYML+LVLCA+LIFF IWHIIAFDELRTDFK+PIDQ NP  ARERL+NIERI
Sbjct: 1   MAFTFAAFCYMLSLVLCAALIFFAIWHIIAFDELRTDFKSPIDQCNPVHARERLRNIERI 60

Query: 61  CCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAV 120
           C LLRKLV+PEYSIH LFC+MFLCA EW+TLGLN+PLLFYH WRYFH PAD SE+ YD  
Sbjct: 61  CFLLRKLVLPEYSIHSLFCIMFLCAQEWLTLGLNVPLLFYHFWRYFHCPADSSELAYDPP 120

Query: 121 SIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159
            +MNAD L+YCQKE+WCKLAFYLLSFFYYLY M+YTLVS
Sbjct: 121 VVMNADTLSYCQKEAWCKLAFYLLSFFYYLYCMIYTLVS 159


>gi|5031639 cornichon-like [Homo sapiens]
          Length = 144

 Score =  222 bits (566), Expect = 9e-59
 Identities = 105/159 (66%), Positives = 118/159 (74%), Gaps = 16/159 (10%)

Query: 1   MAFTFAAFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERI 60
           MAFTFAAFCYML L+L A+LIFF IWHIIAFDEL+TD+KNPIDQ                
Sbjct: 1   MAFTFAAFCYMLALLLTAALIFFAIWHIIAFDELKTDYKNPIDQ---------------- 44

Query: 61  CCLLRKLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAV 120
           C  L  LV+PEY IH  FC+MFLCAAEW+TLGLN+PLL YH+WRY  RP      +YD  
Sbjct: 45  CNTLNPLVLPEYLIHAFFCVMFLCAAEWLTLGLNMPLLAYHIWRYMSRPVMSGPGLYDPT 104

Query: 121 SIMNADILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159
           +IMNADIL YCQKE WCKLAFYLL+FFYYLY M+Y LVS
Sbjct: 105 TIMNADILAYCQKEGWCKLAFYLLAFFYYLYGMIYVLVS 143


>gi|7661824 cornichon homolog 4 [Homo sapiens]
          Length = 139

 Score = 79.3 bits (194), Expect = 1e-15
 Identities = 48/154 (31%), Positives = 77/154 (50%), Gaps = 19/154 (12%)

Query: 7   AFCYMLTLVLCASLIFFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERICCL-LR 65
           A  ++ +L+ C +LIF  ++ II   +L  D+ N                  R CC  L 
Sbjct: 3   AVVFVFSLLDCCALIFLSVYFIITLSDLECDYINA-----------------RSCCSKLN 45

Query: 66  KLVVPEYSIHGLFCLMFLCAAEWVTLGLNIPLLFYHLWRYFHRPADGSEVMYDAVSIMNA 125
           K V+PE   H +  ++ L +  W    LN+P+  ++++RY   P+ G+  ++D   I N 
Sbjct: 46  KWVIPELIGHTIVTVLLLMSLHWFIFLLNLPVATWNIYRYIMVPS-GNMGVFDPTEIHNR 104

Query: 126 DILNYCQKESWCKLAFYLLSFFYYLYSMVYTLVS 159
             L    KE+  KL F+LL FF YLYSM+  L++
Sbjct: 105 GQLKSHMKEAMIKLGFHLLCFFMYLYSMILALIN 138


>gi|160707881 formin 2 [Homo sapiens]
          Length = 1722

 Score = 29.6 bits (65), Expect = 1.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 22   FFVIWHIIAFDELRTDFKNPIDQGNPARARERLKNIERIC 61
            FF IWH     E  +DFK+   + N    +ER+K  E +C
Sbjct: 1661 FFSIWH-----EFSSDFKDFWKKENKLLLQERVKEAEEVC 1695


>gi|52421343 olfactory receptor, family 52, subfamily A, member 4
           [Homo sapiens]
          Length = 304

 Score = 28.5 bits (62), Expect = 2.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 127 ILNYCQKESWCKLAFYLLSFFYYLYSMVYTL 157
           + N C    +    FYLL+FF+  YS ++ L
Sbjct: 242 VFNTCIPHIYVFFQFYLLAFFFIFYSQIWIL 272


>gi|187828357 SMAD family member 9 isoform a [Homo sapiens]
          Length = 467

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 108 RPADGSEVMYDAVSIMNADILNYCQKES--WCKLAFYLLS 145
           +P D +   +  +SI N D    C +E   WC +A+Y L+
Sbjct: 243 QPVDATADRHVVLSIPNGDFRPVCYEEPQHWCSVAYYELN 282


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.336    0.146    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,898,817
Number of Sequences: 37866
Number of extensions: 237585
Number of successful extensions: 767
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 760
Number of HSP's gapped (non-prelim): 7
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.