Search of human proteins with 29171719

Search of human proteins with 29171719

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29171719 glycosylphosphatidylinositol specific phospholipase
D1 isoform 2 precursor [Homo sapiens]
         (176 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29171719 glycosylphosphatidylinositol specific phospholipase ...   375   e-104
gi|29171717 glycosylphosphatidylinositol specific phospholipase ...   352   1e-97
gi|4557882 interleukin 2 receptor, gamma precursor [Homo sapiens]      28   3.1  
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]            28   3.1  
gi|140560994 growth inhibition and differentiation related prote...    28   5.4  
gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]    27   9.2  
gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]    27   9.2  
gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]    27   9.2  
gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]    27   9.2  
gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]     27   9.2  

>gi|29171719 glycosylphosphatidylinositol specific phospholipase D1
           isoform 2 precursor [Homo sapiens]
          Length = 176

 Score =  375 bits (962), Expect = e-104
 Identities = 176/176 (100%), Positives = 176/176 (100%)

Query: 1   MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY 60
           MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY
Sbjct: 1   MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY 60

Query: 61  QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF 120
           QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF
Sbjct: 61  QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF 120

Query: 121 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGTVYLHLLNFLVV 176
           GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGTVYLHLLNFLVV
Sbjct: 121 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGTVYLHLLNFLVV 176


>gi|29171717 glycosylphosphatidylinositol specific phospholipase D1
           isoform 1 precursor [Homo sapiens]
          Length = 840

 Score =  352 bits (903), Expect = 1e-97
 Identities = 166/173 (95%), Positives = 166/173 (95%)

Query: 1   MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY 60
           MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY
Sbjct: 1   MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY 60

Query: 61  QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF 120
           QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF
Sbjct: 61  QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF 120

Query: 121 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGTVYLHLLNF 173
           GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFG   L    F
Sbjct: 121 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQFEF 173


>gi|4557882 interleukin 2 receptor, gamma precursor [Homo sapiens]
          Length = 369

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 22/102 (21%)

Query: 72  PSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLFGITSHMAADVS 131
           PS+  G K +     + + P   ++ H+   ++P+ W  +T K   FLF +    A  +S
Sbjct: 211 PSV-DGQKRYTFRVRSRFNPLCGSAQHWSEWSHPIHWGSNTSKENPFLFALE---AVVIS 266

Query: 132 WHSLGLEQGFL-------RTMGAI-----------DFHGSYS 155
             S+GL    L       RTM  I           ++HG++S
Sbjct: 267 VGSMGLIISLLCVYFWLERTMPRIPTLKNLEDLVTEYHGNFS 308


>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
          Length = 538

 Score = 28.5 bits (62), Expect = 3.1
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 108 WEKDTEKLVAFLFGITSHMAADVSWH 133
           WEK    LV  L G    +  DV+WH
Sbjct: 279 WEKSIGNLVKILHGTRGELLLDVAWH 304


>gi|140560994 growth inhibition and differentiation related protein
           86 [Homo sapiens]
          Length = 778

 Score = 27.7 bits (60), Expect = 5.4
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 7/95 (7%)

Query: 40  LQLHNGRVNYRELLLEHQDAYQ----AGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNA 95
           LQ  +G    RE + E +  Y       I   DC +P + +    +D  +       L  
Sbjct: 593 LQELSGNTKSRESIQEPRSDYYNHEVPDIDLSDCEFPHVIE---IYDFPQEFRTEDLLRV 649

Query: 96  SVHYIRENYPLPWEKDTEKLVAFLFGITSHMAADV 130
              Y ++ + + W  DT  L  F   IT+  A  +
Sbjct: 650 FCSYQKKGFDIKWVDDTHALGVFSSPITARDALGI 684


>gi|170763533 RNA binding motif protein 35A isoform 5 [Homo sapiens]
          Length = 604

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 44  NGRVNYRELLLEHQDAYQAGIVFPDCFY---------PSICKGGKFHDVSESTHWTPFLN 94
           +G+++ R++L  H +A +  ++ P+CFY            C G    D  +    T +LN
Sbjct: 109 DGQLHVRQIL--HPEASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLN 166

Query: 95  ASVHYIRENYPLPWEKDTEKLV-AFLFGITSHMAADVSWHSLGLEQGFLRTMGAID 149
                    Y     +D   ++ A +    +H  +D    +   E G    M  ID
Sbjct: 167 FEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELID 222


>gi|170763529 RNA binding motif protein 35A isoform 3 [Homo sapiens]
          Length = 659

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 44  NGRVNYRELLLEHQDAYQAGIVFPDCFY---------PSICKGGKFHDVSESTHWTPFLN 94
           +G+++ R++L  H +A +  ++ P+CFY            C G    D  +    T +LN
Sbjct: 109 DGQLHVRQIL--HPEASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLN 166

Query: 95  ASVHYIRENYPLPWEKDTEKLV-AFLFGITSHMAADVSWHSLGLEQGFLRTMGAID 149
                    Y     +D   ++ A +    +H  +D    +   E G    M  ID
Sbjct: 167 FEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELID 222


>gi|170763527 RNA binding motif protein 35A isoform 4 [Homo sapiens]
          Length = 608

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 44  NGRVNYRELLLEHQDAYQAGIVFPDCFY---------PSICKGGKFHDVSESTHWTPFLN 94
           +G+++ R++L  H +A +  ++ P+CFY            C G    D  +    T +LN
Sbjct: 109 DGQLHVRQIL--HPEASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLN 166

Query: 95  ASVHYIRENYPLPWEKDTEKLV-AFLFGITSHMAADVSWHSLGLEQGFLRTMGAID 149
                    Y     +D   ++ A +    +H  +D    +   E G    M  ID
Sbjct: 167 FEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELID 222


>gi|170763525 RNA binding motif protein 35A isoform 2 [Homo sapiens]
          Length = 677

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 44  NGRVNYRELLLEHQDAYQAGIVFPDCFY---------PSICKGGKFHDVSESTHWTPFLN 94
           +G+++ R++L  H +A +  ++ P+CFY            C G    D  +    T +LN
Sbjct: 109 DGQLHVRQIL--HPEASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLN 166

Query: 95  ASVHYIRENYPLPWEKDTEKLV-AFLFGITSHMAADVSWHSLGLEQGFLRTMGAID 149
                    Y     +D   ++ A +    +H  +D    +   E G    M  ID
Sbjct: 167 FEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELID 222


>gi|56790297 RNA binding motif protein 35A isoform 1 [Homo sapiens]
          Length = 681

 Score = 26.9 bits (58), Expect = 9.2
 Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 44  NGRVNYRELLLEHQDAYQAGIVFPDCFY---------PSICKGGKFHDVSESTHWTPFLN 94
           +G+++ R++L  H +A +  ++ P+CFY            C G    D  +    T +LN
Sbjct: 109 DGQLHVRQIL--HPEASKKNVLLPECFYSFFDLRKEFKKCCPGSPDIDKLDVATMTEYLN 166

Query: 95  ASVHYIRENYPLPWEKDTEKLV-AFLFGITSHMAADVSWHSLGLEQGFLRTMGAID 149
                    Y     +D   ++ A +    +H  +D    +   E G    M  ID
Sbjct: 167 FEKSSSVSRYGASQVEDMGNIILAMISEPYNHRFSDPERVNYKFESGTCSKMELID 222


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.141    0.463 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,071,478
Number of Sequences: 37866
Number of extensions: 297610
Number of successful extensions: 682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 10
length of query: 176
length of database: 18,247,518
effective HSP length: 95
effective length of query: 81
effective length of database: 14,650,248
effective search space: 1186670088
effective search space used: 1186670088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.