Search of human proteins with 28872768

Search of human proteins with 28872768

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28872768 tRNA aspartic acid methyltransferase 1 isoform c
[Homo sapiens]
         (345 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28872768 tRNA aspartic acid methyltransferase 1 isoform c [Ho...   687   0.0  
gi|28872770 tRNA aspartic acid methyltransferase 1 isoform b [Ho...   674   0.0  
gi|4758184 tRNA aspartic acid methyltransferase 1 isoform a [Hom...   665   0.0  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       38   0.015
gi|19923559 EMSY protein [Homo sapiens]                                30   2.4  
gi|50083293 coiled-coil domain containing 123 [Homo sapiens]           30   4.1  
gi|110349750 malonyl-CoA decarboxylase precursor [Homo sapiens]        29   7.0  
gi|55953087 G protein-binding protein CRFG [Homo sapiens]              28   9.2  

>gi|28872768 tRNA aspartic acid methyltransferase 1 isoform c [Homo
           sapiens]
          Length = 345

 Score =  687 bits (1773), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60
           MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
Sbjct: 1   MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60

Query: 61  TLEEFDRLSFDMILMSPPCQPFTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLI 120
           TLEEFDRLSFDMILMSPPCQPFTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLI
Sbjct: 61  TLEEFDRLSFDMILMSPPCQPFTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLI 120

Query: 121 AKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKD 180
           AKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKD
Sbjct: 121 AKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKD 180

Query: 181 AILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPT 240
           AILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPT
Sbjct: 181 AILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPT 240

Query: 241 CRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPK 300
           CRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPK
Sbjct: 241 CRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPK 300

Query: 301 EIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE 345
           EIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE
Sbjct: 301 EIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILYE 345


>gi|28872770 tRNA aspartic acid methyltransferase 1 isoform b [Homo
           sapiens]
          Length = 367

 Score =  674 bits (1740), Expect = 0.0
 Identities = 345/367 (94%), Positives = 345/367 (94%), Gaps = 22/367 (5%)

Query: 1   MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60
           MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
Sbjct: 1   MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60

Query: 61  TLEEFDRLSFDMILMSPPCQPFTR----------------------DLLIQTIENCGFQY 98
           TLEEFDRLSFDMILMSPPCQPFTR                      DLLIQTIENCGFQY
Sbjct: 61  TLEEFDRLSFDMILMSPPCQPFTRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQY 120

Query: 99  QEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENK 158
           QEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENK
Sbjct: 121 QEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENK 180

Query: 159 IQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVN 218
           IQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVN
Sbjct: 181 IQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVN 240

Query: 219 QYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLT 278
           QYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLT
Sbjct: 241 QYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLT 300

Query: 279 NLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAK 338
           NLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAK
Sbjct: 301 NLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAK 360

Query: 339 LIKILYE 345
           LIKILYE
Sbjct: 361 LIKILYE 367


>gi|4758184 tRNA aspartic acid methyltransferase 1 isoform a [Homo
           sapiens]
          Length = 391

 Score =  665 bits (1716), Expect = 0.0
 Identities = 345/391 (88%), Positives = 345/391 (88%), Gaps = 46/391 (11%)

Query: 1   MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60
           MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI
Sbjct: 1   MEPLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGI 60

Query: 61  TLEEFDRLSFDMILMSPPCQPFTR------------------------------------ 84
           TLEEFDRLSFDMILMSPPCQPFTR                                    
Sbjct: 61  TLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLEN 120

Query: 85  ----------DLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG 134
                     DLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG
Sbjct: 121 VKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPG 180

Query: 135 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR 194
           QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR
Sbjct: 181 QVLMEFPKIESVHPQKYAMDVENKIQEKNVEPNISFDGSIQCSGKDAILFKLETAEEIHR 240

Query: 195 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY 254
           KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY
Sbjct: 241 KNQQDSDLSVKMLKDFLEDDTDVNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGSY 300

Query: 255 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF 314
           IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF
Sbjct: 301 IEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLILKLRYFTPKEIANLLGFPPEFGF 360

Query: 315 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE 345
           PEKITVKQRYRLLGNSLNVHVVAKLIKILYE
Sbjct: 361 PEKITVKQRYRLLGNSLNVHVVAKLIKILYE 391


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 6/150 (4%)

Query: 178  GKDAILFKLETAEEIHRKNQQDSDLS---VKMLKDFLEDDTDVNQYLLPPKSLLRYALLL 234
            G+ A+    E+ + +H  ++Q SD S   +  L  F +  T + Q+L    ++   A  L
Sbjct: 5421 GQIAVCSFGESVKLLHPFHEQFSDYSGSQILRLCKFQQKKTKIAQFLESVANMFAAAQQL 5480

Query: 235  --DIVQPTCRRSVCFTKGYGSYIEGTGSVLQTAEDVQVENIYKSLTNLSQEEQITKLLIL 292
              +I   T +  +  + G G ++EG   VL   +  +  NI+     L        +L +
Sbjct: 5481 SQNISSETAQLLLVVSDGRGLFLEGKERVLAAVQAARNANIFVIFVVLDNPSSRDSILDI 5540

Query: 293  KLRYFT-PKEIANLLGFPPEFGFPEKITVK 321
            K+  F  P E+  +  +  EF FP  I ++
Sbjct: 5541 KVPIFKGPGEMPEIRSYMEEFPFPYYIILR 5570


>gi|19923559 EMSY protein [Homo sapiens]
          Length = 1322

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 102 LLSPTSLGIPNSRLRYFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKIQE 161
           ++S  + G+  S ++     +L S      AP Q+L +FPK     P++    V+ + Q+
Sbjct: 363 VMSTVAQGVSTSAIK-MASTRLPSPKSLVSAPTQILAQFPKQHQQSPKQQLYQVQQQTQQ 421

Query: 162 KNVEPN 167
           +  +P+
Sbjct: 422 QVAQPS 427


>gi|50083293 coiled-coil domain containing 123 [Homo sapiens]
          Length = 783

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 19/104 (18%)

Query: 119 LIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVE-NKIQEKNVEPNISFDGSIQCS 177
           L ++LQ E    +A  + LME  K+  +  QK ++ +E N + E+N              
Sbjct: 520 LKSQLQKEEEKERAEMEELME--KLTVLQAQKKSLLLEKNSLTEQN-------------- 563

Query: 178 GKDAILFKLETAEEIHRKNQQDSDLSVKMLKDFLEDDTDVNQYL 221
              A+  +LE A++I+RK+Q+  ++  K ++  + ++   +QYL
Sbjct: 564 --KALEAELERAQKINRKSQKKIEVLKKQVEKAMGNEMSAHQYL 605


>gi|110349750 malonyl-CoA decarboxylase precursor [Homo sapiens]
          Length = 493

 Score = 28.9 bits (63), Expect = 7.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 117 YFLIAKLQSEPLPFQAPGQVLMEFPKIESVHPQKYAMDVENKI 159
           +F    L  E + + +P +VL +  + E+VHP K  MD++ ++
Sbjct: 189 WFSSGFLNLERVTWHSPCEVLQKISEAEAVHPVKNWMDMKRRV 231


>gi|55953087 G protein-binding protein CRFG [Homo sapiens]
          Length = 634

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 114 RLRYFLIAKLQSEPLPFQAP-GQVLMEFPKIESVHPQKYAMDVENKIQEKN 163
           R+R+F + K++     +     Q+L +FPK++ +HP  +  D+ N + +K+
Sbjct: 42  RIRHFYMRKVKFTQQNYHDRLSQILTDFPKLDDIHP--FYADLMNILYDKD 90


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.138    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,672,406
Number of Sequences: 37866
Number of extensions: 536694
Number of successful extensions: 1246
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1239
Number of HSP's gapped (non-prelim): 9
length of query: 345
length of database: 18,247,518
effective HSP length: 103
effective length of query: 242
effective length of database: 14,347,320
effective search space: 3472051440
effective search space used: 3472051440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.