Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 28558969

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28558969 mediator complex subunit 23 isoform b [Homo
sapiens]
         (1365 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28558969 mediator complex subunit 23 isoform b [Homo sapiens]     2784   0.0  
gi|28558971 mediator complex subunit 23 isoform a [Homo sapiens]     2766   0.0  
gi|24415404 MDN1, midasin homolog [Homo sapiens]                       37   0.13 
gi|189083742 neutrophil cytosolic factor 2 [Homo sapiens]              35   0.38 
gi|67189970 neutrophil cytosolic factor 2 [Homo sapiens]               35   0.38 
gi|134254443 pecanex-like 2 [Homo sapiens]                             34   0.84 
gi|148806932 kyphoscoliosis peptidase [Homo sapiens]                   33   1.4  
gi|16306584 F-box and leucine-rich repeat protein 3 [Homo sapiens]     33   2.4  
gi|20544172 bradykinin receptor B1 [Homo sapiens]                      31   7.1  
gi|195234779 hypothetical protein LOC60686 [Homo sapiens]              31   7.1  
gi|195234776 hypothetical protein LOC60686 [Homo sapiens]              31   7.1  
gi|195233774 hypothetical protein LOC60686 [Homo sapiens]              31   7.1  

>gi|28558969 mediator complex subunit 23 isoform b [Homo sapiens]
          Length = 1365

 Score = 2784 bits (7216), Expect = 0.0
 Identities = 1365/1365 (100%), Positives = 1365/1365 (100%)

Query: 1    METQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQCI 60
            METQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQCI
Sbjct: 1    METQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQCI 60

Query: 61   QWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRLVCESLINSDTLEWERTQLWALTFK 120
            QWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRLVCESLINSDTLEWERTQLWALTFK
Sbjct: 61   QWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRLVCESLINSDTLEWERTQLWALTFK 120

Query: 121  LVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPA 180
            LVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPA
Sbjct: 121  LVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPA 180

Query: 181  YFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNS 240
            YFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNS
Sbjct: 181  YFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNS 240

Query: 241  WKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQTLNIAQHK 300
            WKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQTLNIAQHK
Sbjct: 241  WKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQTLNIAQHK 300

Query: 301  QRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVL 360
            QRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVL
Sbjct: 301  QRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVL 360

Query: 361  SLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDI 420
            SLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDI
Sbjct: 361  SLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDI 420

Query: 421  NKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKI 480
            NKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKI
Sbjct: 421  NKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKI 480

Query: 481  ALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVH 540
            ALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVH
Sbjct: 481  ALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVH 540

Query: 541  AKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFK 600
            AKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFK
Sbjct: 541  AKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFK 600

Query: 601  SHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLIT 660
            SHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLIT
Sbjct: 601  SHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLIT 660

Query: 661  ALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKD 720
            ALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKD
Sbjct: 661  ALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKD 720

Query: 721  ILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNEN 780
            ILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNEN
Sbjct: 721  ILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNEN 780

Query: 781  DIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEF 840
            DIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEF
Sbjct: 781  DIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEF 840

Query: 841  STSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPN 900
            STSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPN
Sbjct: 841  STSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPN 900

Query: 901  DFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPI 960
            DFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPI
Sbjct: 901  DFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPI 960

Query: 961  YFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEM 1020
            YFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEM
Sbjct: 961  YFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEM 1020

Query: 1021 HLRDRAFLKRKLVHAIIGSLKDNRPQGWCLSDTYLKCAMNAREENPWVPDDTYYCRLIGR 1080
            HLRDRAFLKRKLVHAIIGSLKDNRPQGWCLSDTYLKCAMNAREENPWVPDDTYYCRLIGR
Sbjct: 1021 HLRDRAFLKRKLVHAIIGSLKDNRPQGWCLSDTYLKCAMNAREENPWVPDDTYYCRLIGR 1080

Query: 1081 LVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQ 1140
            LVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQ
Sbjct: 1081 LVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQ 1140

Query: 1141 PLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFT 1200
            PLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFT
Sbjct: 1141 PLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFT 1200

Query: 1201 ACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGP 1260
            ACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGP
Sbjct: 1201 ACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGP 1260

Query: 1261 FLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQV 1320
            FLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQV
Sbjct: 1261 FLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQV 1320

Query: 1321 EKIICNLKPALKLRLRFITHISKMEPAAVPPQAMNSGSPAPQSNQ 1365
            EKIICNLKPALKLRLRFITHISKMEPAAVPPQAMNSGSPAPQSNQ
Sbjct: 1321 EKIICNLKPALKLRLRFITHISKMEPAAVPPQAMNSGSPAPQSNQ 1365


>gi|28558971 mediator complex subunit 23 isoform a [Homo sapiens]
          Length = 1368

 Score = 2766 bits (7171), Expect = 0.0
 Identities = 1359/1365 (99%), Positives = 1359/1365 (99%), Gaps = 6/1365 (0%)

Query: 1    METQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQCI 60
            METQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQCI
Sbjct: 1    METQLQSIFEEVVKTEVIEEAFPGMFMDTPEDEKTKLISCLGAFRQFWGGLSQESHEQCI 60

Query: 61   QWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRLVCESLINSDTLEWERTQLWALTFK 120
            QWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRLVCESLINSDTLEWERTQLWALTFK
Sbjct: 61   QWIVKFIHGQHSPKRISFLYDCLAMAVETGLLPPRLVCESLINSDTLEWERTQLWALTFK 120

Query: 121  LVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPA 180
            LVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPA
Sbjct: 121  LVRKIIGGVDYKGVRDLLKVILEKILTIPNTVSSAVVQQLLAAREVIAYILERNACLLPA 180

Query: 181  YFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNS 240
            YFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNS
Sbjct: 181  YFAVTEIRKLYPEGKLPHWLLGNLVSDFVDTFRPTARINSICGRCSLLPVVNNSGAICNS 240

Query: 241  WKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQTLNIAQHK 300
            WKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQ      HK
Sbjct: 241  WKLDPATLRFPLKGLLPYDKDLFEPQTALLRYVLEQPYSRDMVCNMLGLNKQ------HK 294

Query: 301  QRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVL 360
            QRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVL
Sbjct: 295  QRCPVLEDQLVDLVVYAMERSETEEKFDDGGTSQLLWQHLSSQLIFFVLFQFASFPHMVL 354

Query: 361  SLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDI 420
            SLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDI
Sbjct: 355  SLHQKLAGRGLIKGRDHLMWVLLQFISGSIQKNALADFLPVMKLFDLLYPEKEYIPVPDI 414

Query: 421  NKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKI 480
            NKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKI
Sbjct: 415  NKPQSTHAFAMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEFLQQSLRNKSLQMNDYKI 474

Query: 481  ALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVH 540
            ALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVH
Sbjct: 475  ALLCNAYSTNSECFTLPMGALVETIYGNGIMRIPLPGTNCMASGSITPLPMNLLDSLTVH 534

Query: 541  AKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFK 600
            AKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFK
Sbjct: 535  AKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESLGIKGFISQLLPTVFK 594

Query: 601  SHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLIT 660
            SHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLIT
Sbjct: 595  SHAWGILHTLLEMFSYRMHHIQPHYRVQLLSHLHTLAAVAQTNQNQLHLCVESTALRLIT 654

Query: 661  ALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKD 720
            ALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKD
Sbjct: 655  ALGSSEVQPQFTRFLSDPKTVLSAESEELNRALILTLARATHVTDFFTGSDSIQGTWCKD 714

Query: 721  ILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNEN 780
            ILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNEN
Sbjct: 715  ILQTIMSFTPHNWASHTLSCFPGPLQAFFKQNNVPQESRFNLKKNVEEEYRKWKSMSNEN 774

Query: 781  DIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEF 840
            DIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEF
Sbjct: 775  DIITHFSMQGSPPLFLCLLWKMLLETDHINQIGYRVLERIGARALVAHVRTFADFLVYEF 834

Query: 841  STSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPN 900
            STSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPN
Sbjct: 835  STSAGGQQLNKCIEILNDMVWKYNIVTLDRLILCLAMRSHEGNEAQVCYFIIQLLLLKPN 894

Query: 901  DFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPI 960
            DFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPI
Sbjct: 895  DFRNRVSDFVKENSPEHWLQNDWHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPI 954

Query: 961  YFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEM 1020
            YFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEM
Sbjct: 955  YFGNVCLRFLPVFDIVIHRFLELLPVSKSLETLLDHLGGLYKFHDRPVTYLYNTLHYYEM 1014

Query: 1021 HLRDRAFLKRKLVHAIIGSLKDNRPQGWCLSDTYLKCAMNAREENPWVPDDTYYCRLIGR 1080
            HLRDRAFLKRKLVHAIIGSLKDNRPQGWCLSDTYLKCAMNAREENPWVPDDTYYCRLIGR
Sbjct: 1015 HLRDRAFLKRKLVHAIIGSLKDNRPQGWCLSDTYLKCAMNAREENPWVPDDTYYCRLIGR 1074

Query: 1081 LVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQ 1140
            LVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQ
Sbjct: 1075 LVDTMAGKSPGPFPNCDWRFNEFPNPAAHALHVTCVELMALAVSGKEVGNALLNVVLKSQ 1134

Query: 1141 PLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFT 1200
            PLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFT
Sbjct: 1135 PLVPRENITAWMNAIGLIITALPEPYWIVLHDRIVSVISSPSLTSETEWVGYPFRLFDFT 1194

Query: 1201 ACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGP 1260
            ACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGP
Sbjct: 1195 ACHQSYSEMSCSYTLALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGP 1254

Query: 1261 FLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQV 1320
            FLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQV
Sbjct: 1255 FLQRFQQERTRCMIEIGVAFYDMLLNVDQCSTHLNYMDPICDFLYHMKYMFTGDSVKEQV 1314

Query: 1321 EKIICNLKPALKLRLRFITHISKMEPAAVPPQAMNSGSPAPQSNQ 1365
            EKIICNLKPALKLRLRFITHISKMEPAAVPPQAMNSGSPAPQSNQ
Sbjct: 1315 EKIICNLKPALKLRLRFITHISKMEPAAVPPQAMNSGSPAPQSNQ 1359


>gi|24415404 MDN1, midasin homolog [Homo sapiens]
          Length = 5596

 Score = 37.0 bits (84), Expect = 0.13
 Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 19/177 (10%)

Query: 531  MNLLDSLTVH-----AKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYMEIESL 585
            M+ LD+LT H     A    + +  + V ++ H  +S+A APA+ +  +RLL  + I+  
Sbjct: 3300 MDRLDNLTCHLLKKQAFRPQLPAYESLVQEIHHYVTSIAKAPAVQDLLTRLLQALHID-- 3357

Query: 586  GIKGFISQLLPTVFKSHA-WGILH-----TLLEMFSYRMHHIQPHYRVQLLSHLHTLAAV 639
            G +   +Q+  ++ K  A W   H      L E +++    + P  +  +L   H +  V
Sbjct: 3358 GPRS--AQVAQSLLKEEASWQQSHHQFRKRLSEEYTFYPDAVSP-LQASILQLQHGMRLV 3414

Query: 640  AQTNQNQLH---LCVESTALRLITALGSSEVQPQFTRFLSDPKTVLSAESEELNRAL 693
            A      LH   +  +         L    V P F  + +   T+ S +SEE+ R L
Sbjct: 3415 ASELHTSLHSSMVGADRLGTLATALLAFPSVGPTFPTYYAHADTLCSVKSEEVLRGL 3471


>gi|189083742 neutrophil cytosolic factor 2 [Homo sapiens]
          Length = 526

 Score = 35.4 bits (80), Expect = 0.38
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 371 LIKGRDHLMWVLLQFISGSIQKNALADFLPV-MKLFDLLYPEKEYIPVPDINKPQSTHAF 429
           L KG D+   V+     G +  N L    PV +++     P++E  P  DI  P S+ A 
Sbjct: 270 LKKGNDNWATVMFNGQKGLVPCNYLE---PVELRIHPQQQPQEESSPQSDIPAPPSSKAP 326

Query: 430 AMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEF 463
               +     +K +    KL +P+P++L++H+++
Sbjct: 327 GRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY 360


>gi|67189970 neutrophil cytosolic factor 2 [Homo sapiens]
          Length = 526

 Score = 35.4 bits (80), Expect = 0.38
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)

Query: 371 LIKGRDHLMWVLLQFISGSIQKNALADFLPV-MKLFDLLYPEKEYIPVPDINKPQSTHAF 429
           L KG D+   V+     G +  N L    PV +++     P++E  P  DI  P S+ A 
Sbjct: 270 LKKGNDNWATVMFNGQKGLVPCNYLE---PVELRIHPQQQPQEESSPQSDIPAPPSSKAP 326

Query: 430 AMTCIWIHLNRKAQNDNSKLQIPIPHSLRLHHEF 463
               +     +K +    KL +P+P++L++H+++
Sbjct: 327 GRPQLSPGQKQKEEPKEVKLSVPMPYTLKVHYKY 360


>gi|134254443 pecanex-like 2 [Homo sapiens]
          Length = 2137

 Score = 34.3 bits (77), Expect = 0.84
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 521  MASGSITPLPMNLLDSLTVHAKMSLIHSIATRVIKLAHAKSSVALAPALVETYSRLLVYM 580
            +A  +  PLP  + DS+T   K  LI      V+  A + S+V L+   +  +  ++++ 
Sbjct: 1075 LAESAADPLPKKMKDSVTDVLKWDLIVCAVVAVLSFAVSASTVFLS---LRPFLSIVLF- 1130

Query: 581  EIESLGIKGFISQ-LLPTVFKSHAW-GILHTLLEMFSYRMHHIQ 622
                 G  GF++  +LP + K H W  I H +L+   Y    ++
Sbjct: 1131 --ALAGAVGFVTHYVLPQLRKHHPWMWISHPILKNKEYHQREVR 1172


>gi|148806932 kyphoscoliosis peptidase [Homo sapiens]
          Length = 661

 Score = 33.5 bits (75), Expect = 1.4
 Identities = 35/150 (23%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 947  VDPPVQIQSPYLPIYFGNVCLRFLPVF-DIVIHRFLELLPVSKSLETLLDHLGGLYKFHD 1005
            V  P ++  P  P +F        P   D +IH       +S S+E  ++ L  L+   D
Sbjct: 442  VQLPAELHQPVGPSWFSEQMGIMKPSHPDPIIHTSDGRCSISFSVEEGINVLASLHG-DD 500

Query: 1006 RPVTYLYNTLHYYEMHLRDRAFLKRKLVHAIIGSL-----KDNRPQGWCLSDTYLKCAMN 1060
             P+T      + +++H   +  LK +L HA   +L     K   P  +     YL C  N
Sbjct: 501  GPITEETQRRYIFQLHREKQTELKVQLPHAGKFALKIFVKKRQEPGNYIFVFNYLVCCAN 560

Query: 1061 AREENPWVPDDTYYCRLIGRLVDTMAGKSP 1090
             +   P  P+          L++ ++G  P
Sbjct: 561  TKVNWPMFPESFGNWGQDNELLEPLSGVLP 590


>gi|16306584 F-box and leucine-rich repeat protein 3 [Homo sapiens]
          Length = 428

 Score = 32.7 bits (73), Expect = 2.4
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 10/136 (7%)

Query: 872 ILCLAMRSHEGNEAQVCYFII--QLLLLKPNDFRNRVS----DFVKENSPE---HWLQND 922
           ILC+A + H   E  + Y ++  +LLL   ++   R+     D V EN  +   H +Q  
Sbjct: 216 ILCVADQCHGLRELALNYHLLSDELLLALSSEKHVRLEHLRIDVVSENPGQTHFHTIQKS 275

Query: 923 WHTKHMNYHKKYPEKLYFEGLAEQVDPPVQIQSPYLPIYFG-NVCLRFLPVFDIVIHRFL 981
                + +  K    +YF    E+ DP  + + P   +YFG +V    L    +   R +
Sbjct: 276 SWDAFIRHSPKVNLVMYFFLYEEEFDPFFRYEIPATHLYFGRSVSKDVLGRVGMTCPRLV 335

Query: 982 ELLPVSKSLETLLDHL 997
           EL+  +  L  L + L
Sbjct: 336 ELVVCANGLRPLDEEL 351


>gi|20544172 bradykinin receptor B1 [Homo sapiens]
          Length = 353

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 1215 LALAHAVWHHSSIGQLSLIPKFLTEVLLPIVKTEFQLLYVYHLVGPFLQRFQQERTRC 1272
            L L H  WH + I +L+++       LLP+    F   + YH++     R +  RTRC
Sbjct: 191  LLLPHEAWHFARIVELNIL-----GFLLPLAAIVF---FNYHILASLRTREEVSRTRC 240


>gi|195234779 hypothetical protein LOC60686 [Homo sapiens]
          Length = 538

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 18/100 (18%)

Query: 702 HVTDF--FTGSDSIQGTWCKDILQTIMS-------FTPHNWASHTLSCFPGPLQAFFKQN 752
           H+T+   F GS+SI+ +W   +++ ++         +PHN+    L    G   A+F   
Sbjct: 315 HITNDKRFNGSESIKSSWNISVVKFLLEKLKQELVTSPHNYTDKELK---GACVAYFLTK 371

Query: 753 NVPQESRFNLKKNVEEE------YRKWKSMSNENDIITHF 786
                +  N  K ++E+       R+++  +N + I+ HF
Sbjct: 372 RREYRNSLNPFKGLKEKEEKKLRSRRYRLFANRSSIMRHF 411


>gi|195234776 hypothetical protein LOC60686 [Homo sapiens]
          Length = 538

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 18/100 (18%)

Query: 702 HVTDF--FTGSDSIQGTWCKDILQTIMS-------FTPHNWASHTLSCFPGPLQAFFKQN 752
           H+T+   F GS+SI+ +W   +++ ++         +PHN+    L    G   A+F   
Sbjct: 315 HITNDKRFNGSESIKSSWNISVVKFLLEKLKQELVTSPHNYTDKELK---GACVAYFLTK 371

Query: 753 NVPQESRFNLKKNVEEE------YRKWKSMSNENDIITHF 786
                +  N  K ++E+       R+++  +N + I+ HF
Sbjct: 372 RREYRNSLNPFKGLKEKEEKKLRSRRYRLFANRSSIMRHF 411


>gi|195233774 hypothetical protein LOC60686 [Homo sapiens]
          Length = 538

 Score = 31.2 bits (69), Expect = 7.1
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 18/100 (18%)

Query: 702 HVTDF--FTGSDSIQGTWCKDILQTIMS-------FTPHNWASHTLSCFPGPLQAFFKQN 752
           H+T+   F GS+SI+ +W   +++ ++         +PHN+    L    G   A+F   
Sbjct: 315 HITNDKRFNGSESIKSSWNISVVKFLLEKLKQELVTSPHNYTDKELK---GACVAYFLTK 371

Query: 753 NVPQESRFNLKKNVEEE------YRKWKSMSNENDIITHF 786
                +  N  K ++E+       R+++  +N + I+ HF
Sbjct: 372 RREYRNSLNPFKGLKEKEEKKLRSRRYRLFANRSSIMRHF 411


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,118,022
Number of Sequences: 37866
Number of extensions: 2425446
Number of successful extensions: 6284
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6275
Number of HSP's gapped (non-prelim): 16
length of query: 1365
length of database: 18,247,518
effective HSP length: 115
effective length of query: 1250
effective length of database: 13,892,928
effective search space: 17366160000
effective search space used: 17366160000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 68 (30.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press