Search of human proteins with 28077093

Search of human proteins with 28077093

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28077093 retinoblastoma-binding protein 6 isoform 3 [Homo
sapiens]
         (118 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28077093 retinoblastoma-binding protein 6 isoform 3 [Homo sap...   239   4e-64
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap...   205   7e-54
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap...   205   7e-54
gi|172073175 microtubule associated serine/threonine kinase-like...    29   0.70 
gi|7662020 hypothetical protein LOC9766 [Homo sapiens]                 27   4.5  
gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]                         27   4.5  
gi|4505507 oligophrenin 1 [Homo sapiens]                               26   7.7  

>gi|28077093 retinoblastoma-binding protein 6 isoform 3 [Homo
           sapiens]
          Length = 118

 Score =  239 bits (609), Expect = 4e-64
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD 60
           MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD
Sbjct: 1   MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD 60

Query: 61  NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAVCKNTISHFFYTLLLPL 118
           NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAVCKNTISHFFYTLLLPL
Sbjct: 61  NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAVCKNTISHFFYTLLLPL 118


>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
           sapiens]
          Length = 1758

 Score =  205 bits (521), Expect = 7e-54
 Identities = 102/108 (94%), Positives = 105/108 (97%)

Query: 1   MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD 60
           MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD
Sbjct: 1   MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD 60

Query: 61  NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAVCKNTIS 108
           NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKA+  ++ S
Sbjct: 61  NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAIDDSSAS 108


>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
           sapiens]
          Length = 1792

 Score =  205 bits (521), Expect = 7e-54
 Identities = 102/108 (94%), Positives = 105/108 (97%)

Query: 1   MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD 60
           MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD
Sbjct: 1   MSCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDD 60

Query: 61  NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAVCKNTIS 108
           NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKA+  ++ S
Sbjct: 61  NALIPKNSSVIVRRIPIGGVKSTSKTYVISRTEPAMATTKAIDDSSAS 108


>gi|172073175 microtubule associated serine/threonine kinase-like
           [Homo sapiens]
          Length = 878

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 21/89 (23%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 2   SCVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN 61
           +CV YK +   N  T    GL + + DLK  +   ++   A+ +  I N+ T ++ T + 
Sbjct: 464 TCVEYKHNEMTNCYTNQNTGLTVEVQDLKLSVHKSQQNDCANKE-NIVNSFTDKQQTPEK 522

Query: 62  ALIPKNSSVIVRRIPIGGVKSTSKTYVIS 90
             IP  +  ++  +     K++ + Y+ S
Sbjct: 523 LPIPMIAKNLMCELDEDCEKNSKRDYLSS 551


>gi|7662020 hypothetical protein LOC9766 [Homo sapiens]
          Length = 303

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 31  KQIMGREKLKAADCDLQITNAQTKEEYTDDNALI 64
           +Q+  +E   + + D+Q   + T EEYTDD  L+
Sbjct: 267 RQLAHKETADSENSDIQSLLSLTSEEYTDDIPLL 300


>gi|52426735 ankyrin 2 isoform 1 [Homo sapiens]
          Length = 3957

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 16/66 (24%), Positives = 30/66 (45%)

Query: 28   DLKKQIMGREKLKAADCDLQITNAQTKEEYTDDNALIPKNSSVIVRRIPIGGVKSTSKTY 87
            D+K+   G + L        +  +++KE   D+  L+P + S  V  IP    +  S+  
Sbjct: 3146 DVKEGATGADPLPLETSAESLALSESKETVDDEADLLPDDVSEEVEEIPASDAQLNSQMG 3205

Query: 88   VISRTE 93
            + + TE
Sbjct: 3206 ISASTE 3211


>gi|4505507 oligophrenin 1 [Homo sapiens]
          Length = 802

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 36 REKLKAADCDLQITNAQTKEEYTDDNALI 64
          RE+LK  + +L+ TN   K+   D NALI
Sbjct: 19 RERLKCYEQELERTNKFIKDVIKDGNALI 47


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.132    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,826,789
Number of Sequences: 37866
Number of extensions: 127163
Number of successful extensions: 352
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 7
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.