Search of human proteins with 27477074

Search of human proteins with 27477074

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27477074 interleukin 17B receptor precursor [Homo sapiens]
         (502 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27477074 interleukin 17B receptor precursor [Homo sapiens]        1042   0.0  
gi|23238208 interleukin 17A receptor precursor [Homo sapiens]         149   8e-36
gi|166063983 interleukin 17 receptor D [Homo sapiens]                  51   3e-06
gi|30578410 source of immunodominant MHC-associated peptides [Ho...    30   5.1  
gi|71979937 sialophorin [Homo sapiens]                                 30   6.7  
gi|4507181 sialophorin [Homo sapiens]                                  30   6.7  

>gi|27477074 interleukin 17B receptor precursor [Homo sapiens]
          Length = 502

 Score = 1042 bits (2694), Expect = 0.0
 Identities = 502/502 (100%), Positives = 502/502 (100%)

Query: 1   MSLVLLSLAALCRSAVPREPTVQCGSETGPSPEWMLQHDLIPGDLRDLRVEPVTTSVATG 60
           MSLVLLSLAALCRSAVPREPTVQCGSETGPSPEWMLQHDLIPGDLRDLRVEPVTTSVATG
Sbjct: 1   MSLVLLSLAALCRSAVPREPTVQCGSETGPSPEWMLQHDLIPGDLRDLRVEPVTTSVATG 60

Query: 61  DYSILMNVSWVLRADASIRLLKATKICVTGKSNFQSYSCVRCNYTEAFQTQTRPSGGKWT 120
           DYSILMNVSWVLRADASIRLLKATKICVTGKSNFQSYSCVRCNYTEAFQTQTRPSGGKWT
Sbjct: 61  DYSILMNVSWVLRADASIRLLKATKICVTGKSNFQSYSCVRCNYTEAFQTQTRPSGGKWT 120

Query: 121 FSYIGFPVELNTVYFIGAHNIPNANMNEDGPSMSVNFTSPGCLDHIMKYKKKCVKAGSLW 180
           FSYIGFPVELNTVYFIGAHNIPNANMNEDGPSMSVNFTSPGCLDHIMKYKKKCVKAGSLW
Sbjct: 121 FSYIGFPVELNTVYFIGAHNIPNANMNEDGPSMSVNFTSPGCLDHIMKYKKKCVKAGSLW 180

Query: 181 DPNITACKKNEETVEVNFTTTPLGNRYMALIQHSTIIGFSQVFEPHQKKQTRASVVIPVT 240
           DPNITACKKNEETVEVNFTTTPLGNRYMALIQHSTIIGFSQVFEPHQKKQTRASVVIPVT
Sbjct: 181 DPNITACKKNEETVEVNFTTTPLGNRYMALIQHSTIIGFSQVFEPHQKKQTRASVVIPVT 240

Query: 241 GDSEGATVQLTPYFPTCGSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLV 300
           GDSEGATVQLTPYFPTCGSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLV
Sbjct: 241 GDSEGATVQLTPYFPTCGSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLV 300

Query: 301 ATWVLVAGIYLMWRHERIKKTSFSTTTLLPPIKVLVVYPSEICFHHTICYFTEFLQNHCR 360
           ATWVLVAGIYLMWRHERIKKTSFSTTTLLPPIKVLVVYPSEICFHHTICYFTEFLQNHCR
Sbjct: 301 ATWVLVAGIYLMWRHERIKKTSFSTTTLLPPIKVLVVYPSEICFHHTICYFTEFLQNHCR 360

Query: 361 SEVILEKWQKKKIAEMGPVQWLATQKKAADKVVFLLSNDVNSVCDGTCGKSEGSPSENSQ 420
           SEVILEKWQKKKIAEMGPVQWLATQKKAADKVVFLLSNDVNSVCDGTCGKSEGSPSENSQ
Sbjct: 361 SEVILEKWQKKKIAEMGPVQWLATQKKAADKVVFLLSNDVNSVCDGTCGKSEGSPSENSQ 420

Query: 421 DLFPLAFNLFCSDLRSQIHLHKYVVVYFREIDTKDDYNALSVCPKYHLMKDATAFCAELL 480
           DLFPLAFNLFCSDLRSQIHLHKYVVVYFREIDTKDDYNALSVCPKYHLMKDATAFCAELL
Sbjct: 421 DLFPLAFNLFCSDLRSQIHLHKYVVVYFREIDTKDDYNALSVCPKYHLMKDATAFCAELL 480

Query: 481 HVKQQVSAGKRSQACHDGCCSL 502
           HVKQQVSAGKRSQACHDGCCSL
Sbjct: 481 HVKQQVSAGKRSQACHDGCCSL 502


>gi|23238208 interleukin 17A receptor precursor [Homo sapiens]
          Length = 866

 Score =  149 bits (375), Expect = 8e-36
 Identities = 124/496 (25%), Positives = 209/496 (42%), Gaps = 47/496 (9%)

Query: 13  RSAVPREPTVQCG--SETGPSPEWMLQHDLIPGDLRDLRVEPVTTSVATGDYSILMNVSW 70
           R+ V  +P + C   + T     W+   +L P   +DL+++        GD   + ++ W
Sbjct: 39  RALVCSQPGLNCTVKNSTCLDDSWIHPRNLTPSSPKDLQIQLHFAHTQQGDLFPVAHIEW 98

Query: 71  VLRADASIRLLKATKICVTGKSNFQSYSCVRCNYTEAFQTQTRPSGGKWTFSYIGFPVEL 130
            L+ DASI  L+  ++ V  + N     CVR  +    +   R    +W F++  F V+ 
Sbjct: 99  TLQTDASILYLEGAELSVL-QLNTNERLCVRFEFLSKLRHHHR----RWRFTFSHFVVDP 153

Query: 131 NTVYFIGAHNIPNANMNEDGPSMSVNFTSPGCLDHIMKYKKKCVKAGSLWDPNITACKKN 190
           +  Y +  H++P    + D    S NF  P C    MK    C+ +GSLWDPNIT     
Sbjct: 154 DQEYEVTVHHLPKPIPDGDPNHQSKNFLVPDCEHARMKVTTPCMSSGSLWDPNITVETLE 213

Query: 191 EETVEVNFTTTPLGNRYMALI-------QHSTIIGFSQVFEPHQKKQTRASVVIPVTGDS 243
              + V+FT       Y  L+        HS       +  P  ++  + S V     + 
Sbjct: 214 AHQLRVSFTLWNESTHYQILLTSFPHMENHSCFEHMHHIPAPRPEEFHQRSNVTLTLRNL 273

Query: 244 EGA---TVQLTPYFPTCGSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLV 300
           +G     VQ+ P+F +C +DC+RH  TV        P P+ +       W  +  +S+L+
Sbjct: 274 KGCCRHQVQIQPFFSSCLNDCLRHSATVSCPEMPDTPEPIPDYMPLWVYWF-ITGISILL 332

Query: 301 ATWVLVAGIYLMWRHERIKKTSFSTTT----------LLP----PIKVLVVYPSE-ICFH 345
              V++  + + WR        +S  T          L+P    P KV ++Y ++   + 
Sbjct: 333 VGSVILLIVCMTWRLAGPGSEKYSDDTKYTDGLPAADLIPPPLKPRKVWIIYSADHPLYV 392

Query: 346 HTICYFTEFLQNHCRSEVILEKWQKKKIAEMGPVQWLATQK----KAADKVVFLLSNDVN 401
             +  F +FL   C +EV L+  +++ I+E G + W+  QK    ++  K++ L S    
Sbjct: 393 DVVLKFAQFLLTACGTEVALDLLEEQAISEAGVMTWVGRQKQEMVESNSKIIVLCSRGTR 452

Query: 402 SVCDGTCGKSEGSP-------SENSQDLFPLAFNLFCSDLRSQIHLHKYVVVYFREIDTK 454
           +      G+  G+P        +   DLF  A N+   D +       YVV YF E+   
Sbjct: 453 AKWQALLGR--GAPVRLRCDHGKPVGDLFTAAMNMILPDFKRPACFGTYVVCYFSEVSCD 510

Query: 455 DDY-NALSVCPKYHLM 469
            D  +     P+Y LM
Sbjct: 511 GDVPDLFGAAPRYPLM 526


>gi|166063983 interleukin 17 receptor D [Homo sapiens]
          Length = 739

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 328 LLPPIKVLVVYPSEICFHH--TICYFTEFLQNHCRSEVILEKWQKKKIAEMGPVQWLATQ 385
           L P  KV + Y S+   +H   +  F  FLQ+ C  EV L+ W+   +   G  +W+  +
Sbjct: 352 LRPRPKVFLCYSSKDGQNHMNVVQCFAYFLQDFCGCEVALDLWEDFSLCREGQREWVIQK 411

Query: 386 KKAADKVVFLLSNDVNSVCDGTCGKSEGSPSENSQ-DLFPLAFNLFCSDLR-----SQIH 439
              +  ++ + S  +    D    K +G    + + +LF +A +     LR     S   
Sbjct: 412 IHESQFIIVVCSKGMKYFVDKKNYKHKGGGRGSGKGELFLVAVSAIAEKLRQAKQSSSAA 471

Query: 440 LHKYVVVYFREIDTKDDYNALSVCPKYHLMKDATAFCAEL 479
           L K++ VYF      D    L +  KY LM +    C+ L
Sbjct: 472 LSKFIAVYFDYSCEGDVPGILDLSTKYRLMDNLPQLCSHL 511


>gi|30578410 source of immunodominant MHC-associated peptides [Homo
           sapiens]
          Length = 826

 Score = 30.0 bits (66), Expect = 5.1
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 258 GSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLVATWV 304
           G+ C  HK      P    P  L    S+P GW  LL  ++L   W+
Sbjct: 37  GAQCA-HKAAGGAAPPKPAPAGLSGGLSQPAGWQSLLSFTILFLAWL 82


>gi|71979937 sialophorin [Homo sapiens]
          Length = 400

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 247 TVQLTPYFPTCGSDCIRHKGTVVLCPQTGV---PFPLDNNKSKPGGWLPLLLLSLLVATW 303
           T  L P     G      K + ++ P T       P  N      G LP+ +L  L+A  
Sbjct: 209 TGSLEPSSGASGPQVSSVKLSTMMSPTTSTNASTVPFRNPDENSRGMLPVAVLVALLAVI 268

Query: 304 VLVAGIYLMWRHERIKKT 321
           VLVA + L+WR  + ++T
Sbjct: 269 VLVA-LLLLWRRRQKRRT 285


>gi|4507181 sialophorin [Homo sapiens]
          Length = 400

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 247 TVQLTPYFPTCGSDCIRHKGTVVLCPQTGV---PFPLDNNKSKPGGWLPLLLLSLLVATW 303
           T  L P     G      K + ++ P T       P  N      G LP+ +L  L+A  
Sbjct: 209 TGSLEPSSGASGPQVSSVKLSTMMSPTTSTNASTVPFRNPDENSRGMLPVAVLVALLAVI 268

Query: 304 VLVAGIYLMWRHERIKKT 321
           VLVA + L+WR  + ++T
Sbjct: 269 VLVA-LLLLWRRRQKRRT 285


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,700,446
Number of Sequences: 37866
Number of extensions: 936321
Number of successful extensions: 1796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1788
Number of HSP's gapped (non-prelim): 6
length of query: 502
length of database: 18,247,518
effective HSP length: 107
effective length of query: 395
effective length of database: 14,195,856
effective search space: 5607363120
effective search space used: 5607363120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.