Search of human proteins with 26638657

Search of human proteins with 26638657

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|26638657 mitochondrial ribosomal protein L20 [Homo sapiens]
         (149 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|26638657 mitochondrial ribosomal protein L20 [Homo sapiens]        301   1e-82
gi|153791384 ribosomal protein L22-like 1 [Homo sapiens]               28   2.2  
gi|21450836 zinc finger with UFM1-specific peptidase domain [Hom...    28   2.9  
gi|24497583 aldo-keto reductase family 1, member C3 [Homo sapiens]     27   8.3  

>gi|26638657 mitochondrial ribosomal protein L20 [Homo sapiens]
          Length = 149

 Score =  301 bits (771), Expect = 1e-82
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60
           MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK
Sbjct: 1   MVFLTAQLWLRNRVTDRYFRIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLK 60

Query: 61  KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120
           KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA
Sbjct: 61  KKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLADLAIYEPKTFKSLAALA 120

Query: 121 SRRRHEGFAAALGDGKEPEGIFSRVVQYH 149
           SRRRHEGFAAALGDGKEPEGIFSRVVQYH
Sbjct: 121 SRRRHEGFAAALGDGKEPEGIFSRVVQYH 149


>gi|153791384 ribosomal protein L22-like 1 [Homo sapiens]
          Length = 122

 Score = 28.5 bits (62), Expect = 2.2
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 30  HFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKY 83
           H    KN+   ++ +   + ++K    +YLKK N+R  W+  + +  + + L+Y
Sbjct: 56  HIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRD-WLRVVASDKETYELRY 108


>gi|21450836 zinc finger with UFM1-specific peptidase domain [Homo
           sapiens]
          Length = 578

 Score = 28.1 bits (61), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 89  NLVKCQVELNRKVLADLAIYEPKTFKSLAALASRRRHEGF 128
           N ++C +E+N  +L+  A   PK         S  +HEGF
Sbjct: 79  NTLQCGMEVNSSILSGCASNHPKNSAQNLTKDSTLKHEGF 118


>gi|24497583 aldo-keto reductase family 1, member C3 [Homo sapiens]
          Length = 323

 Score = 26.6 bits (57), Expect = 8.3
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 45  TVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNRKVLAD 104
           T   A  KC  A   K   +      ++     + GLKY  +  N V+C    NR  L D
Sbjct: 146 TTWEAMEKCKDAGLAKSIGVSNFNRRQLEMILNKPGLKYKPVC-NQVECHPYFNRSKLLD 204

Query: 105 LAIYEPKTFKSLAALASRR 123
               +     + +AL S+R
Sbjct: 205 FCKSKDIVLVAYSALGSQR 223


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,817,554
Number of Sequences: 37866
Number of extensions: 163259
Number of successful extensions: 433
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 431
Number of HSP's gapped (non-prelim): 4
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.