Search of human proteins with 251831119

Search of human proteins with 251831119

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|251831119 cytochrome b [Homo sapiens]
         (380 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|251831119 cytochrome b [Homo sapiens]                              776   0.0  
gi|196123591 cytochrome b [Homo sapiens neanderthalensis]             757   0.0  
gi|50897292 olfactory receptor, family 8, subfamily D, member 2 ...    32   0.95 
gi|222352161 ATPase, class V, type 10D [Homo sapiens]                  31   2.1  
gi|213021148 SVOP-like isoform 1 [Homo sapiens]                        30   2.8  
gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]            30   3.6  
gi|14424433 ATPase, class V, type 10A [Homo sapiens]                   30   3.6  
gi|51230656 olfactory receptor, family 8, subfamily I, member 2 ...    29   8.0  

>gi|251831119 cytochrome b [Homo sapiens]
          Length = 380

 Score =  776 bits (2004), Expect = 0.0
 Identities = 380/380 (100%), Positives = 380/380 (100%)

Query: 1   MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60
           MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS
Sbjct: 1   MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60

Query: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSETWNIGIILL 120
           TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSETWNIGIILL
Sbjct: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSETWNIGIILL 120

Query: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180
           LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT
Sbjct: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180

Query: 181 FHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLLLFLLSLM 240
           FHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLLLFLLSLM
Sbjct: 181 FHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLLLFLLSLM 240

Query: 241 TLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300
           TLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI
Sbjct: 241 TLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300

Query: 301 LAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQVASVLYFT 360
           LAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQVASVLYFT
Sbjct: 301 LAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQVASVLYFT 360

Query: 361 TILILMPTISLIENKMLKWA 380
           TILILMPTISLIENKMLKWA
Sbjct: 361 TILILMPTISLIENKMLKWA 380


>gi|196123591 cytochrome b [Homo sapiens neanderthalensis]
          Length = 378

 Score =  757 bits (1954), Expect = 0.0
 Identities = 371/378 (98%), Positives = 373/378 (98%)

Query: 1   MTPMRKTNPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60
           MTPMRK NPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS
Sbjct: 1   MTPMRKINPLMKLINHSFIDLPTPSNISAWWNFGSLLGACLILQITTGLFLAMHYSPDAS 60

Query: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSETWNIGIILL 120
           TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYS+TWNIGIILL
Sbjct: 61  TAFSSIAHITRDVNYGWIIRYLHANGASMFFICLFLHIGRGLYYGSFLYSKTWNIGIILL 120

Query: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180
           LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT
Sbjct: 121 LATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQWIWGGYSVDSPTLTRFFT 180

Query: 181 FHFILPFIIAALATLHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLLLFLLSLM 240
           FHFILPFIIAALA LHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGL LFLLSLM
Sbjct: 181 FHFILPFIIAALAALHLLFLHETGSNNPLGITSHSDKITFHPYYTIKDALGLFLFLLSLM 240

Query: 241 TLTLFSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300
           TLTL SPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI
Sbjct: 241 TLTLLSPDLLGDPDNYTLANPLNTPPHIKPEWYFLFAYTILRSVPNKLGGVLALLLSILI 300

Query: 301 LAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFTIIGQVASVLYFT 360
           LAMIPILH+SKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPF IIGQVASVLYFT
Sbjct: 301 LAMIPILHVSKQQSMMFRPLSQSLYWLLAADLLILTWIGGQPVSYPFIIIGQVASVLYFT 360

Query: 361 TILILMPTISLIENKMLK 378
           TILILMPTISLIENKMLK
Sbjct: 361 TILILMPTISLIENKMLK 378


>gi|50897292 olfactory receptor, family 8, subfamily D, member 2
           [Homo sapiens]
          Length = 311

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 286 NKLGGVLALLLSI-LILAMIPILHMSKQQSMMFRPLSQSLYWLLAADLLI--LTWIGGQP 342
           N L   LA+L+S   I + I  +H ++ QS  F   S  L   LA  +    +T++  +P
Sbjct: 206 NTLATTLAVLISYAFIFSSILGIHSTEGQSKAFGTCSSHL---LAVGIFFGSITFMYFKP 262

Query: 343 VSYPFTIIGQVASVLYFTTILILMPTISLIENKMLK 378
            S       +V+SV Y T I +L P I  + NK +K
Sbjct: 263 PSSTTMEKEKVSSVFYITIIPMLNPLIYSLRNKDVK 298


>gi|222352161 ATPase, class V, type 10D [Homo sapiens]
          Length = 1426

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 10/113 (8%)

Query: 272  WYFLFAYTILRSVPNKLGGVLALLLSILILAMIPILHMSKQQSMMFRPLSQSLYWLLAAD 331
            W  +F   +  S P  + GVL   +S   L  +P L+ S Q+S  + P     +W+   D
Sbjct: 1146 WVLIFFNLLFTSAPPVIYGVLEKDVSAETLMQLPELYRSGQKSEAYLP---HTFWITLLD 1202

Query: 332  LLILTWIGGQPVSYPFTIIGQVASVLYF-----TTILILMPTISLIENKMLKW 379
                + +    V Y FT  G    +  F     T  L ++    +IE+K L W
Sbjct: 1203 AFYQSLVCFF-VPY-FTYQGSDTDIFAFGNPLNTAALFIVLLHLVIESKSLTW 1253


>gi|213021148 SVOP-like isoform 1 [Homo sapiens]
          Length = 492

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 9/72 (12%)

Query: 116 GIILLLATMATAFMGYVLPWGQMSFW--GATVITNLLSA-IPYIGTDLVQWIWGGYSVDS 172
           G+I+    + T + GY+LP  Q+ FW  G+ +I  L S  IP IG     W W       
Sbjct: 157 GLIIKTEFLPTKYRGYMLPLSQV-FWLAGSLLIIGLASVIIPTIG-----WRWLIRVASI 210

Query: 173 PTLTRFFTFHFI 184
           P +     F FI
Sbjct: 211 PGIILIVAFKFI 222


>gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]
          Length = 742

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 104 YGSFLYSETWNIGIILLLATMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTDLVQW 163
           +G F ++  + +G+ L+   +    +G+VLP  +     +     +L  I Y+G  +  +
Sbjct: 161 HGRFQWTLYFVLGLALMADGVEVFVVGFVLPSAEKDMCLSDSNKGMLGLIVYLGMMVGAF 220

Query: 164 IWGG 167
           +WGG
Sbjct: 221 LWGG 224


>gi|14424433 ATPase, class V, type 10A [Homo sapiens]
          Length = 1499

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 271  EWYFLFAYTILRSVPNKLGGVLALLLSILILAMIPILHMSKQQSMMFRPLSQSLYWLLAA 330
            +WY +F   +  S+P  + GVL   +   +L   P L+ S Q    +RP +   +W   A
Sbjct: 1120 QWYLIFFNLLFSSLPPLVTGVLDRDVPANVLLTNPQLYKSGQNMEEYRPRT---FWFNMA 1176

Query: 331  D 331
            D
Sbjct: 1177 D 1177


>gi|51230656 olfactory receptor, family 8, subfamily I, member 2
           [Homo sapiens]
          Length = 310

 Score = 28.9 bits (63), Expect = 8.0
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 7/106 (6%)

Query: 273 YFLFAYTILRSVPNKLGGVLALLLSILILAMIPILHMSKQQSMMFRPLSQSLYWLLAADL 332
           + L  +T+L S+      ++ +   I+I A++ I   + +Q       S  +   +    
Sbjct: 199 FVLAGFTLLSSLL-----IITVTYIIIISAILRIQSAAGRQKAFSTCASHLMAVTIFYGS 253

Query: 333 LILTWIGGQPVSYPFTIIGQVASVLYFTTILILMPTISLIENKMLK 378
           LI T++  QP +       QVASV Y   I +L P I  + NK +K
Sbjct: 254 LIFTYL--QPDNTSSLTQAQVASVFYTIVIPMLNPLIYSLRNKDVK 297


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.142    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,844,335
Number of Sequences: 37866
Number of extensions: 580327
Number of successful extensions: 1577
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 9
length of query: 380
length of database: 18,247,518
effective HSP length: 104
effective length of query: 276
effective length of database: 14,309,454
effective search space: 3949409304
effective search space used: 3949409304
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.