Search of human proteins with 239758065

Search of human proteins with 239758065

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758065 PREDICTED: similar to BMS1-like, ribosome assembly
protein [Homo sapiens]
         (331 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758065 PREDICTED: similar to BMS1-like, ribosome assembly ...   689   0.0  
gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]      469   e-132
gi|239743748 PREDICTED: similar to BMS1-like, ribosome assembly ...   267   1e-71
gi|239743846 PREDICTED: similar to BMS1-like, ribosome assembly ...   241   5e-64
gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]                 67   2e-11
gi|60499021 ferrochelatase isoform b precursor [Homo sapiens]          29   5.1  
gi|60499025 ferrochelatase isoform a precursor [Homo sapiens]          29   5.1  
gi|54234057 ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltrans...    29   6.6  
gi|83367077 mucin 16 [Homo sapiens]                                    28   8.7  

>gi|239758065 PREDICTED: similar to BMS1-like, ribosome assembly
           protein [Homo sapiens]
          Length = 331

 Score =  689 bits (1777), Expect = 0.0
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MFPVFKHAGLHSYLHLPCLVAGEKKTVETYSEQTVELNRTEFEDQDDEARVPYEGFRPGV 60
           MFPVFKHAGLHSYLHLPCLVAGEKKTVETYSEQTVELNRTEFEDQDDEARVPYEGFRPGV
Sbjct: 1   MFPVFKHAGLHSYLHLPCLVAGEKKTVETYSEQTVELNRTEFEDQDDEARVPYEGFRPGV 60

Query: 61  YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGDVQMHLKKHRWYKKILKSRDPIIF 120
           YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGDVQMHLKKHRWYKKILKSRDPIIF
Sbjct: 61  YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGDVQMHLKKHRWYKKILKSRDPIIF 120

Query: 121 SVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWDPVTPQGTGFLAIQSVSGIMP 180
           SVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWDPVTPQGTGFLAIQSVSGIMP
Sbjct: 121 SVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWDPVTPQGTGFLAIQSVSGIMP 180

Query: 181 DFRIAATGVVLDLDKSIKIVKKLKPTGFPYKIFKNTSFIKYGYESSFENVEVNYLFSDIV 240
           DFRIAATGVVLDLDKSIKIVKKLKPTGFPYKIFKNTSFIKYGYESSFENVEVNYLFSDIV
Sbjct: 181 DFRIAATGVVLDLDKSIKIVKKLKPTGFPYKIFKNTSFIKYGYESSFENVEVNYLFSDIV 240

Query: 241 FTRTWYPVSIPAFYNPVTSLLKPVGEKDTWSRTWTTGQLRLTHGVRLKANKDSLYKVLVV 300
           FTRTWYPVSIPAFYNPVTSLLKPVGEKDTWSRTWTTGQLRLTHGVRLKANKDSLYKVLVV
Sbjct: 241 FTRTWYPVSIPAFYNPVTSLLKPVGEKDTWSRTWTTGQLRLTHGVRLKANKDSLYKVLVV 300

Query: 301 CVLVEMKAVLYRQGVTQTLFYNFLCTLNIRV 331
           CVLVEMKAVLYRQGVTQTLFYNFLCTLNIRV
Sbjct: 301 CVLVEMKAVLYRQGVTQTLFYNFLCTLNIRV 331


>gi|224589071 BMS1-like, ribosome assembly protein [Homo sapiens]
          Length = 1282

 Score =  469 bits (1206), Expect = e-132
 Identities = 234/300 (78%), Positives = 245/300 (81%), Gaps = 32/300 (10%)

Query: 32   EQTVELNRTEFEDQDDEARVPYEGFRPGVYVRVEIENVPCEFVQNFDPHYPIILGGLGNS 91
            ++  +LNR EFEDQDDEARV YEGFRPG+YVR+EIENVPCEFVQNFDPHYPIILGGLGNS
Sbjct: 856  QKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEFVQNFDPHYPIILGGLGNS 915

Query: 92   EGNVGDVQMHLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQH 151
            EGNVG VQM LKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQH
Sbjct: 916  EGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQH 975

Query: 152  MHCGAAFWDPVTPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKPTGFPYK 211
            MHCGAAFW P+TPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLK TGFPYK
Sbjct: 976  MHCGAAFWGPITPQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKLTGFPYK 1035

Query: 212  IFKNTSFIKYGYESSFE--------------------------------NVEVNYLFSDI 239
            IFKNTSFIK  + S+ E                                + E   L SDI
Sbjct: 1036 IFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASFEDKLLMSDI 1095

Query: 240  VFTRTWYPVSIPAFYNPVTSLLKPVGEKDTWSRTWTTGQLRLTHGVRLKANKDSLYKVLV 299
            VF RTWYPVSIPAFYNPVTSLLKPVGEKDTWS   TTGQLRL HGVRLKANKDSLYK ++
Sbjct: 1096 VFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLKANKDSLYKPIL 1155


>gi|239743748 PREDICTED: similar to BMS1-like, ribosome assembly
           protein (yeast) [Homo sapiens]
          Length = 166

 Score =  267 bits (682), Expect = 1e-71
 Identities = 131/151 (86%), Positives = 135/151 (89%), Gaps = 2/151 (1%)

Query: 1   MFPVFKHAGLHSYLHLPCLVAGEKKTVETYSEQTVELNRTEFEDQDDEARVPYEGFRPGV 60
           MFP+F+HAGLHSYLHL  L AGEKK V TYSEQTVELN  EFEDQDDEARV YEGFRPG+
Sbjct: 1   MFPMFEHAGLHSYLHLLSLGAGEKKMVGTYSEQTVELNHVEFEDQDDEARVQYEGFRPGM 60

Query: 61  YVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGDVQMHLKKHRWYKKILKSRDPIIF 120
           YVRVEIENVPCEFVQNFDP YPIILGGLGNSEGNVG VQM LKKH WYKKILKS+DPIIF
Sbjct: 61  YVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVGHVQMRLKKHLWYKKILKSQDPIIF 120

Query: 121 SVGWRRFQTIPLYYIEDHNGRQRLLKYTPQH 151
           SVGWRRFQTI LYYIEDHNGRQRLLK  P H
Sbjct: 121 SVGWRRFQTILLYYIEDHNGRQRLLK--PYH 149


>gi|239743846 PREDICTED: similar to BMS1-like, ribosome assembly
           protein (yeast) [Homo sapiens]
          Length = 175

 Score =  241 bits (616), Expect = 5e-64
 Identities = 112/123 (91%), Positives = 115/123 (93%)

Query: 37  LNRTEFEDQDDEARVPYEGFRPGVYVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVG 96
           LN  EFEDQDDEARV YEGFRPG+YVRVEIENVPCEFVQNFDP YPIILGGLGNSEGNVG
Sbjct: 52  LNHVEFEDQDDEARVQYEGFRPGMYVRVEIENVPCEFVQNFDPLYPIILGGLGNSEGNVG 111

Query: 97  DVQMHLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGA 156
            VQM LKKH WYKKILKS+DPIIFSVGWRRFQTI LYYIEDHNGRQRLLKYTPQH+HCGA
Sbjct: 112 HVQMRLKKHLWYKKILKSQDPIIFSVGWRRFQTILLYYIEDHNGRQRLLKYTPQHIHCGA 171

Query: 157 AFW 159
           AFW
Sbjct: 172 AFW 174


>gi|39780588 TSR1, 20S rRNA accumulation [Homo sapiens]
          Length = 804

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 43/169 (25%), Positives = 83/169 (49%), Gaps = 4/169 (2%)

Query: 54  EGFRPGVYVRVEIENVPCEFVQNFDPHYPIILGGLGNSEGNVGDVQMHLKKHRWYKKILK 113
           EG   G YV + +  VP   V+ F    P+I   L   E  +  + M +++     + +K
Sbjct: 550 EGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVK 609

Query: 114 SRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHMHCGAAFWDPVT-PQGTGFLAI 172
           +++ +IF  G+RRF+  PL+       + +L ++    M   A  + P+T P  +  L  
Sbjct: 610 AKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFK 669

Query: 173 QSVSGIMPDFRIAATGVVLDLDKSIKIVKKLKPTGFPYKIFKNTSFIKY 221
           Q  +G+     + ATG ++ +D    ++K++  +G P+KIF   + ++Y
Sbjct: 670 QKSNGM---HSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRY 715


>gi|60499021 ferrochelatase isoform b precursor [Homo sapiens]
          Length = 423

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 197 IKIVKKLKPTGFPYKIFKNTSFIKYGYESSFENVEVNYLFSDIVFTRTWYP----VSIPA 252
           +K++ +L P   P+K +    ++    E + E +E + L   I FT+  YP     +  +
Sbjct: 144 VKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQ--YPQYSCSTTGS 201

Query: 253 FYNPVTSLLKPVGEKDTWSRTWTTGQLRLTHGVRLKANKDSLYKVL 298
             N +      VG K T    W+T     TH + ++   D + K L
Sbjct: 202 SLNAIYRYYNQVGRKPTMK--WSTIDRWPTHHLLIQCFADHILKEL 245


>gi|60499025 ferrochelatase isoform a precursor [Homo sapiens]
          Length = 429

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 8/106 (7%)

Query: 197 IKIVKKLKPTGFPYKIFKNTSFIKYGYESSFENVEVNYLFSDIVFTRTWYP----VSIPA 252
           +K++ +L P   P+K +    ++    E + E +E + L   I FT+  YP     +  +
Sbjct: 150 VKLLDELSPNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQ--YPQYSCSTTGS 207

Query: 253 FYNPVTSLLKPVGEKDTWSRTWTTGQLRLTHGVRLKANKDSLYKVL 298
             N +      VG K T    W+T     TH + ++   D + K L
Sbjct: 208 SLNAIYRYYNQVGRKPTMK--WSTIDRWPTHHLLIQCFADHILKEL 251


>gi|54234057 ST8 alpha-N-acetyl-neuraminide
           alpha-2,8-sialyltransferase 6 [Homo sapiens]
          Length = 398

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 11/67 (16%)

Query: 133 YYIEDHNGRQRLLKYTPQHMHCGAAFWDPVTPQGTGFLAIQSVSGIMPDFRIAATGVVLD 192
           Y +E+   RQ++L + P+++   A FW     +  G  A +  +G+M       T V ++
Sbjct: 285 YTLEESKARQKVLFFHPKYLKDLALFW-----RTKGVTAYRLSTGLM------ITSVAVE 333

Query: 193 LDKSIKI 199
           L K++K+
Sbjct: 334 LCKNVKL 340


>gi|83367077 mucin 16 [Homo sapiens]
          Length = 14507

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 225  SSFENVEVNYLFSDIVFTRTWYPVSIPAFYNPV--TSLLKPVGEKDTWSRTWTT 276
            SS   V V  L S + FT  W+  S P   + V  +SL+K  G+ DT   T T+
Sbjct: 4746 SSQAPVLVTTLPSSVAFTPQWHSTSSPVSMSSVLTSSLVKTAGKVDTSLETVTS 4799


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,670,280
Number of Sequences: 37866
Number of extensions: 554545
Number of successful extensions: 989
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 981
Number of HSP's gapped (non-prelim): 13
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.