Guide to the Human Genome
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Name: LOC100291939 Sequence: fasta or formatted (130aa) NCBI GI: 239757404
Description:

PREDICTED: similar to hCG2042414

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.1          4           1
 C cysteine            0.0          0           0
 D aspartate           5.4          7           1
 E glutamate           4.6          6           1
 F phenylalanine       4.6          6           1
 G glycine             5.4          7           2
 H histidine           3.8          5           1
 I isoleucine          7.7         10           2
 K lysine              6.9          9           2
 L leucine             9.2         12           1
 M methionine          0.8          1           1
 N asparagine          3.1          4           2
 P proline             7.7         10           1
 Q glutamine           3.1          4           1
 R arginine            5.4          7           2
 S serine             10.8         14           1
 T threonine           4.6          6           1
 V valine              6.2          8           2
 W tryptophan          3.8          5           1
 Y tyrosine            3.8          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG2042414 
LOC100290010          0.996   PREDICTED: hypothetical protein XP_002348036 
LOC100288335          0.992   PREDICTED: hypothetical protein XP_002343739 
SULT2A1               0.454   bile-salt sulfotransferase 2A1 
SULT2B1               0.317   sulfotransferase family, cytosolic, 2B, member 1 iso...
SULT2B1               0.317   sulfotransferase family, cytosolic, 2B, member 1 iso...
SULT1A4               0.141   aryl sulfotransferase 
SULT1A4               0.141   aryl sulfotransferase 
SULT1A3               0.141   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A3               0.141   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1E1               0.137   sulfotransferase, estrogen-preferring 
SULT1A1               0.133   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A1               0.133   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A1               0.133   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A1               0.133   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1C2               0.129   sulfotransferase family, cytosolic, 1C, member 1 isof...
SULT1A2               0.129   sulfotransferase family, cytosolic, 1A, phenol-prefe...
SULT1A2               0.129   sulfotransferase family, cytosolic, 1A, phenol-prefer...
SULT1B1               0.120   sulfotransferase family, cytosolic, 1B, member 1 [Ho...
SULT1C4               0.120   sulfotransferase family, cytosolic, 1C, member 2 [Ho...
SULT1C3               0.108   sulfotransferase family, cytosolic, 1C, member 3 [Ho...
SULT1C2               0.076   sulfotransferase family, cytosolic, 1C, member 1 iso...
SULT4A1               0.072   sulfotransferase family 4A, member 1 
SULT6B1               0.056   sulfotransferase family, cytosolic, 6B, member 1 [Ho...
TMPRSS11E             0.012   transmembrane protease, serine 11E 
TMPRSS11E2            0.012   transmembrane protease, serine 11E2 
LOC389328             0.012   PREDICTED: hypothetical protein 
LOC389328             0.012   PREDICTED: hypothetical protein 
C10orf71              0.012   hypothetical protein LOC118461 isoform 2 
C10orf71              0.012   hypothetical protein LOC118461 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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