Search of human proteins with 119395714

Search of human proteins with 119395714

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|119395714 fukutin [Homo sapiens]
         (461 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|119395712 fukutin [Homo sapiens]                                   966   0.0  
gi|119395714 fukutin [Homo sapiens]                                   966   0.0  
gi|89941475 fukutin-related protein [Homo sapiens]                     46   8e-05
gi|13236528 fukutin-related protein [Homo sapiens]                     46   8e-05
gi|239747664 PREDICTED: similar to hCG2042412 [Homo sapiens]           30   3.5  
gi|10835175 5-hydroxytryptamine (serotonin) receptor 2A [Homo sa...    29   7.9  
gi|111038120 hypothetical protein LOC158427 [Homo sapiens]             29   7.9  

>gi|119395712 fukutin [Homo sapiens]
          Length = 461

 Score =  966 bits (2496), Expect = 0.0
 Identities = 461/461 (100%), Positives = 461/461 (100%)

Query: 1   MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSTKNGAGLSKSKGSRIGFDSTQWRAVKK 60
           MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSTKNGAGLSKSKGSRIGFDSTQWRAVKK
Sbjct: 1   MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSTKNGAGLSKSKGSRIGFDSTQWRAVKK 60

Query: 61  FIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVPRDFTAFALQYHLW 120
           FIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVPRDFTAFALQYHLW
Sbjct: 61  FIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVPRDFTAFALQYHLW 120

Query: 121 KNEEGWFRIAENMGFQCLKIESKDPRLDGIDSLSGTEIPLHYICKLATHAIHLVVFHERS 180
           KNEEGWFRIAENMGFQCLKIESKDPRLDGIDSLSGTEIPLHYICKLATHAIHLVVFHERS
Sbjct: 121 KNEEGWFRIAENMGFQCLKIESKDPRLDGIDSLSGTEIPLHYICKLATHAIHLVVFHERS 180

Query: 181 GNYLWHGHLRLKEHIDRKFVPFRKLQFGRYPGAFDRPELQQVTVDGLEVLIPKDPMHFVE 240
           GNYLWHGHLRLKEHIDRKFVPFRKLQFGRYPGAFDRPELQQVTVDGLEVLIPKDPMHFVE
Sbjct: 181 GNYLWHGHLRLKEHIDRKFVPFRKLQFGRYPGAFDRPELQQVTVDGLEVLIPKDPMHFVE 240

Query: 241 EVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSG 300
           EVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSG
Sbjct: 241 EVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSG 300

Query: 301 TCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGLPLKHKFGKVEDSLELSFQGK 360
           TCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGLPLKHKFGKVEDSLELSFQGK
Sbjct: 301 TCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGLPLKHKFGKVEDSLELSFQGK 360

Query: 361 DDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIE 420
           DDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIE
Sbjct: 361 DDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIE 420

Query: 421 ANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY 461
           ANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY
Sbjct: 421 ANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY 461


>gi|119395714 fukutin [Homo sapiens]
          Length = 461

 Score =  966 bits (2496), Expect = 0.0
 Identities = 461/461 (100%), Positives = 461/461 (100%)

Query: 1   MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSTKNGAGLSKSKGSRIGFDSTQWRAVKK 60
           MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSTKNGAGLSKSKGSRIGFDSTQWRAVKK
Sbjct: 1   MSRINKNVVLALLTLTSSAFLLFQLYYYKHYLSTKNGAGLSKSKGSRIGFDSTQWRAVKK 60

Query: 61  FIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVPRDFTAFALQYHLW 120
           FIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVPRDFTAFALQYHLW
Sbjct: 61  FIMLTSNQNVPVFLIDPLILELINKNFEQVKNTSHGSTSQCKFFCVPRDFTAFALQYHLW 120

Query: 121 KNEEGWFRIAENMGFQCLKIESKDPRLDGIDSLSGTEIPLHYICKLATHAIHLVVFHERS 180
           KNEEGWFRIAENMGFQCLKIESKDPRLDGIDSLSGTEIPLHYICKLATHAIHLVVFHERS
Sbjct: 121 KNEEGWFRIAENMGFQCLKIESKDPRLDGIDSLSGTEIPLHYICKLATHAIHLVVFHERS 180

Query: 181 GNYLWHGHLRLKEHIDRKFVPFRKLQFGRYPGAFDRPELQQVTVDGLEVLIPKDPMHFVE 240
           GNYLWHGHLRLKEHIDRKFVPFRKLQFGRYPGAFDRPELQQVTVDGLEVLIPKDPMHFVE
Sbjct: 181 GNYLWHGHLRLKEHIDRKFVPFRKLQFGRYPGAFDRPELQQVTVDGLEVLIPKDPMHFVE 240

Query: 241 EVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSG 300
           EVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSG
Sbjct: 241 EVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPFWLSSG 300

Query: 301 TCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGLPLKHKFGKVEDSLELSFQGK 360
           TCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGLPLKHKFGKVEDSLELSFQGK
Sbjct: 301 TCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILAFQDAGLPLKHKFGKVEDSLELSFQGK 360

Query: 361 DDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIE 420
           DDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIE
Sbjct: 361 DDVKLDVFFFYEETDHMWNGGTQAKTGKKFKYLFPKFTLCWTEFVDMKVHVPCETLEYIE 420

Query: 421 ANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY 461
           ANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY
Sbjct: 421 ANYGKTWKIPVKTWDWKRSPPNVQPNGIWPISEWDEVIQLY 461


>gi|89941475 fukutin-related protein [Homo sapiens]
          Length = 495

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 275 KSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILA 334
           ++ +E  +     L   GV +WL  G+ LG  R  +IIP+  DVDLGI+++D  +   L 
Sbjct: 320 RALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGIYLEDVGNCEQLR 379

Query: 335 FQDAGLPLKHKFGKVEDSLE-----LSFQGKDDVKLDVFFFY 371
             +AG  +  +    E ++E     + +   + + +D++ FY
Sbjct: 380 GAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPFY 421


>gi|13236528 fukutin-related protein [Homo sapiens]
          Length = 495

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 5/102 (4%)

Query: 275 KSAKELLQLAAKTLNKLGVPFWLSSGTCLGWYRQCNIIPYSKDVDLGIFIQDYKSDIILA 334
           ++ +E  +     L   GV +WL  G+ LG  R  +IIP+  DVDLGI+++D  +   L 
Sbjct: 320 RALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWDYDVDLGIYLEDVGNCEQLR 379

Query: 335 FQDAGLPLKHKFGKVEDSLE-----LSFQGKDDVKLDVFFFY 371
             +AG  +  +    E ++E     + +   + + +D++ FY
Sbjct: 380 GAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPFY 421


>gi|239747664 PREDICTED: similar to hCG2042412 [Homo sapiens]
          Length = 336

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 429 IPVKTWDWKRSPPNVQPNGIWPISEWDEVI 458
           +PV  WD    P +    GI P+S WD VI
Sbjct: 191 VPVSAWDGGIVPVSAWDGGIVPVSVWDGVI 220


>gi|10835175 5-hydroxytryptamine (serotonin) receptor 2A [Homo
           sapiens]
          Length = 471

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)

Query: 245 SRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQ 282
           SR+I+C+YKE +   Q  L  NT+ A+A++ S  ++ Q
Sbjct: 392 SRYIQCQYKENKKPLQLIL-VNTIPALAYKSSQLQMGQ 428


>gi|111038120 hypothetical protein LOC158427 [Homo sapiens]
          Length = 516

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 6/83 (7%)

Query: 240 EEVPHSRFIECRYKEARAFFQQYLDDNTVEAVAFRKSAKELLQLAAKTLNKLGVPF---- 295
           +EVP  R  EC+ K  +   Q + D  ++      + A E+    A  L +L V      
Sbjct: 64  KEVPTKRSFECKEKLWKCCRQLFTDQTSIHRHVATQHADEIYHQTASILKQLAVTLSTSK 123

Query: 296 WLSSGTCLGWYRQCNIIPYSKDV 318
            LSS       ++C  +P+S DV
Sbjct: 124 SLSSADEKNPLKEC--LPHSHDV 144


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,796,615
Number of Sequences: 37866
Number of extensions: 785248
Number of successful extensions: 1353
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1332
Number of HSP's gapped (non-prelim): 23
length of query: 461
length of database: 18,247,518
effective HSP length: 106
effective length of query: 355
effective length of database: 14,233,722
effective search space: 5052971310
effective search space used: 5052971310
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.