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Search of human proteins with 239754866
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754866 PREDICTED: hypothetical protein XP_002346136 [Homo
sapiens]
(65 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754866 PREDICTED: hypothetical protein XP_002346136 [Homo ... 134 2e-32
gi|239749405 PREDICTED: hypothetical protein XP_002347012 [Homo ... 134 2e-32
gi|239743540 PREDICTED: hypothetical protein XP_002342872 [Homo ... 134 2e-32
gi|239757747 PREDICTED: similar to Serine/threonine-protein kina... 27 2.7
gi|239746767 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|27477134 nucleoporin 210 [Homo sapiens] 27 2.7
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 26 7.8
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 26 7.8
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
>gi|239754866 PREDICTED: hypothetical protein XP_002346136 [Homo
sapiens]
Length = 65
Score = 134 bits (337), Expect = 2e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH
Sbjct: 1 MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
Query: 61 TMQQK 65
TMQQK
Sbjct: 61 TMQQK 65
>gi|239749405 PREDICTED: hypothetical protein XP_002347012 [Homo
sapiens]
Length = 65
Score = 134 bits (337), Expect = 2e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH
Sbjct: 1 MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
Query: 61 TMQQK 65
TMQQK
Sbjct: 61 TMQQK 65
>gi|239743540 PREDICTED: hypothetical protein XP_002342872 [Homo
sapiens]
Length = 65
Score = 134 bits (337), Expect = 2e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH
Sbjct: 1 MIHWVFTFYKFIRSVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
Query: 61 TMQQK 65
TMQQK
Sbjct: 61 TMQQK 65
>gi|239757747 PREDICTED: similar to Serine/threonine-protein
kinase PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 110
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 14 SVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGR 52
++R + R FP S P A R GGA C +R S R
Sbjct: 11 TLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR 49
>gi|239746767 PREDICTED: hypothetical protein [Homo sapiens]
Length = 255
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 14 SVRAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGR 52
++R + R FP S P A R GGA C +R S R
Sbjct: 112 TLRGCTEERTLSLTFPGLSVPAAPREGGARSCLVRESAR 150
>gi|27477134 nucleoporin 210 [Homo sapiens]
Length = 1887
Score = 27.3 bits (59), Expect = 2.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 4 WVFTFYKFIRSVRAEDDRRVGVAIFPARST 33
W+ KF ++V AED +G+A+F S+
Sbjct: 671 WILEPSKFFQNVTAEDTDSIGLALFAPHSS 700
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 16 RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
RA + RR G PA TP L+ GA+ +RL ++ V RH
Sbjct: 273 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 315
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 16 RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
RA + RR G PA TP L+ GA+ +RL ++ V RH
Sbjct: 273 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 315
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 16 RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
RA + RR G PA TP L+ GA+ +RL ++ V RH
Sbjct: 268 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 310
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 16 RAEDDRRVGVAIFPARSTPGALRLGGASGCELRLSGRILRVAPRH 60
RA + RR G PA TP L+ GA+ +RL ++ V RH
Sbjct: 268 RARETRRRGEEGVPAAGTPRCLQQEGATQVAVRLP--LVSVLVRH 310
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.142 0.442
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,367,812
Number of Sequences: 37866
Number of extensions: 69847
Number of successful extensions: 236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 10
length of query: 65
length of database: 18,247,518
effective HSP length: 38
effective length of query: 27
effective length of database: 16,808,610
effective search space: 453832470
effective search space used: 453832470
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.