Search of human proteins with 239754683

Search of human proteins with 239754683

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754683 PREDICTED: hypothetical protein [Homo sapiens]
         (139 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754683 PREDICTED: hypothetical protein [Homo sapiens]           290   2e-79
gi|239757360 PREDICTED: hypothetical protein [Homo sapiens]            46   1e-05
gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]            45   1e-05
gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens]      28   1.8  
gi|66346698 alpha-N-acetylglucosaminidase precursor [Homo sapiens]     27   7.0  
gi|28973795 taste receptor, type 2, member 60 [Homo sapiens]           27   7.0  

>gi|239754683 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 139

 Score =  290 bits (743), Expect = 2e-79
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MLSMGLLRSQSSRSLDRYSKAPLGMTVSQLSNSSRVLRLARPLKAPTSICRMEFLPNCRT 60
           MLSMGLLRSQSSRSLDRYSKAPLGMTVSQLSNSSRVLRLARPLKAPTSICRMEFLPNCRT
Sbjct: 1   MLSMGLLRSQSSRSLDRYSKAPLGMTVSQLSNSSRVLRLARPLKAPTSICRMEFLPNCRT 60

Query: 61  SRWWRWRKVSAWIIWMLFSMRLRYRVFEGIPCGTSERPRRVHTTLLNWLLHEQTEGQFWG 120
           SRWWRWRKVSAWIIWMLFSMRLRYRVFEGIPCGTSERPRRVHTTLLNWLLHEQTEGQFWG
Sbjct: 61  SRWWRWRKVSAWIIWMLFSMRLRYRVFEGIPCGTSERPRRVHTTLLNWLLHEQTEGQFWG 120

Query: 121 PAEAAAAMAAHRIHTCAVR 139
           PAEAAAAMAAHRIHTCAVR
Sbjct: 121 PAEAAAAMAAHRIHTCAVR 139


>gi|239757360 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 535

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 37  LRLARPLKAPTSICRMEFLPNCRTSRWWRWRKVSAWIIWMLFSMRLRYRVFEGIPCGTSE 96
           + L  PL+ P  +           SR++     +AW  W       RYRV  G+  GTS 
Sbjct: 211 IHLPEPLRHPRLLLTPPAALERNGSRFYDGDVATAWGCWF------RYRVLTGMLAGTSA 264

Query: 97  RPRRVHTTLLNWLLHEQTEGQ 117
           R  RV  T L WLL EQ  GQ
Sbjct: 265 RSLRVQITRLAWLLQEQATGQ 285


>gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 491

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 29/80 (36%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 38  RLARPLKAPTSICRMEFLPNCRTSRWWRWRKVSAWIIWMLFSMRLRYRVFEGIPCGTSER 97
           +L  PL+ P  +           SR++     +AW  W       RYRV  G+  GTS R
Sbjct: 170 QLPEPLRHPRLLLTPPAALERNGSRFYDGDVATAWGCWF------RYRVLTGMLAGTSAR 223

Query: 98  PRRVHTTLLNWLLHEQTEGQ 117
             RV  T L WLL EQ  GQ
Sbjct: 224 SLRVQITRLAWLLQEQATGQ 243


>gi|50659086 prenyl diphosphate synthase, subunit 1 [Homo sapiens]
          Length = 415

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 61 SRWWRWRKVSAW 72
          SRWWRWR+  +W
Sbjct: 3  SRWWRWRRGCSW 14


>gi|66346698 alpha-N-acetylglucosaminidase precursor [Homo sapiens]
          Length = 743

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)

Query: 105 LLNWLLHEQTEGQFWGPAEAAAAMAA 130
           L  WL   Q   QFWGPA+  A + A
Sbjct: 349 LQGWLFQHQP--QFWGPAQIRAVLGA 372


>gi|28973795 taste receptor, type 2, member 60 [Homo sapiens]
          Length = 318

 Score = 26.6 bits (57), Expect = 7.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 63  WWRWRKVSAWIIWMLFS 79
           +W   K+S W+ WMLFS
Sbjct: 131 FWLKHKLSGWLPWMLFS 147


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.132    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,125,983
Number of Sequences: 37866
Number of extensions: 195832
Number of successful extensions: 588
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 582
Number of HSP's gapped (non-prelim): 7
length of query: 139
length of database: 18,247,518
effective HSP length: 92
effective length of query: 47
effective length of database: 14,763,846
effective search space: 693900762
effective search space used: 693900762
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.