Search of human proteins with 239754518

Search of human proteins with 239754518

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754518 PREDICTED: hypothetical protein XP_002346017 [Homo
sapiens]
         (55 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754518 PREDICTED: hypothetical protein XP_002346017 [Homo ...   115   1e-26
gi|239749079 PREDICTED: hypothetical protein XP_002346904 [Homo ...   115   1e-26
gi|239743105 PREDICTED: hypothetical protein XP_002342737 [Homo ...   115   1e-26
gi|239508760 PREDICTED: hypothetical protein [Homo sapiens]           115   1e-26
gi|239756776 PREDICTED: similar to transformation related protei...    29   0.91 
gi|239751263 PREDICTED: hypothetical protein XP_002347773 [Homo ...    29   0.91 
gi|239745756 PREDICTED: hypothetical protein XP_002343546 [Homo ...    29   0.91 

>gi|239754518 PREDICTED: hypothetical protein XP_002346017 [Homo
          sapiens]
          Length = 55

 Score =  115 bits (287), Expect = 1e-26
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55
          MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA
Sbjct: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55


>gi|239749079 PREDICTED: hypothetical protein XP_002346904 [Homo
          sapiens]
          Length = 55

 Score =  115 bits (287), Expect = 1e-26
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55
          MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA
Sbjct: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55


>gi|239743105 PREDICTED: hypothetical protein XP_002342737 [Homo
          sapiens]
          Length = 55

 Score =  115 bits (287), Expect = 1e-26
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55
          MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA
Sbjct: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55


>gi|239508760 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 55

 Score =  115 bits (287), Expect = 1e-26
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55
          MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA
Sbjct: 1  MAGHTEERRRGVSEVDPLCQQVAAVGKVQKTLLIWTRDVLAARVGHIPLRPCTGA 55


>gi|239756776 PREDICTED: similar to transformation related protein
          53 inducible protein 13 [Homo sapiens]
          Length = 169

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 4  HTEERRRGVSEVDPLCQQVAAVGKVQKTL 32
          H E+RRR VSE D +C ++  VG+V + L
Sbjct: 70 HREQRRRRVSEAD-VCDRLLEVGRVPERL 97


>gi|239751263 PREDICTED: hypothetical protein XP_002347773 [Homo
          sapiens]
          Length = 169

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 4  HTEERRRGVSEVDPLCQQVAAVGKVQKTL 32
          H E+RRR VSE D +C ++  VG+V + L
Sbjct: 70 HREQRRRRVSEAD-VCDRLLEVGRVPERL 97


>gi|239745756 PREDICTED: hypothetical protein XP_002343546 [Homo
          sapiens]
          Length = 169

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 4  HTEERRRGVSEVDPLCQQVAAVGKVQKTL 32
          H E+RRR VSE D +C ++  VG+V + L
Sbjct: 70 HREQRRRRVSEAD-VCDRLLEVGRVPERL 97


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,967,949
Number of Sequences: 37866
Number of extensions: 50391
Number of successful extensions: 89
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 7
length of query: 55
length of database: 18,247,518
effective HSP length: 29
effective length of query: 26
effective length of database: 17,149,404
effective search space: 445884504
effective search space used: 445884504
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.