Guide to the Human Genome
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Name: LOC100292545 Sequence: fasta or formatted (109aa) NCBI GI: 239752856
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5          6           2
 C cysteine            4.6          5           1
 D aspartate           3.7          4           1
 E glutamate           4.6          5           1
 F phenylalanine       5.5          6           2
 G glycine             8.3          9           3
 H histidine           0.0          0           0
 I isoleucine          5.5          6           2
 K lysine              5.5          6           1
 L leucine            12.8         14           2
 M methionine          0.9          1           1
 N asparagine          4.6          5           1
 P proline             7.3          8           1
 Q glutamine           1.8          2           1
 R arginine            7.3          8           2
 S serine              9.2         10           1
 T threonine           4.6          5           2
 V valine              5.5          6           1
 W tryptophan          0.0          0           0
 Y tyrosine            2.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100287946          1.000   PREDICTED: hypothetical protein 
LOC100289210          1.000   PREDICTED: hypothetical protein XP_002342102 
KCNQ3                 0.015   potassium voltage-gated channel KQT-like protein 3 [H...
PADI4                 0.015   peptidyl arginine deiminase, type IV 
SSPO                  0.010   SCO-spondin 
C6orf141              0.010   hypothetical protein LOC135398 
FBN2                  0.005   fibrillin 2 precursor 
HGSNAT                0.005   heparan-alpha-glucosaminide N-acetyltransferase [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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