BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239750930 PREDICTED: hypothetical protein [Homo sapiens] (116 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239750930 PREDICTED: hypothetical protein [Homo sapiens] 236 3e-63 gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo ... 222 4e-59 gi|22267436 nipsnap homolog 3A [Homo sapiens] 28 1.6 gi|45827701 pad-1-like [Homo sapiens] 28 2.0 gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Ho... 27 4.5 gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 27 4.5 gi|46361983 hydrocephalus inducing isoform b [Homo sapiens] 27 4.5 gi|157364974 sucrase-isomaltase [Homo sapiens] 26 5.9 gi|21361743 nipsnap homolog 3B [Homo sapiens] 26 7.7 >gi|239750930 PREDICTED: hypothetical protein [Homo sapiens] Length = 116 Score = 236 bits (602), Expect = 3e-63 Identities = 116/116 (100%), Positives = 116/116 (100%) Query: 1 MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60 MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV Sbjct: 1 MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60 Query: 61 GDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYYNLVGEQGAVDPLFQM 116 GDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYYNLVGEQGAVDPLFQM Sbjct: 61 GDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYYNLVGEQGAVDPLFQM 116 >gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo sapiens] Length = 118 Score = 222 bits (566), Expect = 4e-59 Identities = 113/118 (95%), Positives = 115/118 (97%), Gaps = 2/118 (1%) Query: 1 MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60 MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV Sbjct: 1 MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60 Query: 61 GDALVRAVHVYYNLVGDALVRAVHVYYNLVGE-LVRAVHVYYNLVGEQ-GAVDPLFQM 116 GDALVRAVHVYYNLVGDALVRAVHVYYNLVG+ LVRAVHVYYNLVG+ GAVDPLFQM Sbjct: 61 GDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGAVDPLFQM 118 >gi|22267436 nipsnap homolog 3A [Homo sapiens] Length = 247 Score = 28.1 bits (61), Expect = 1.6 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%) Query: 29 LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 84 L GDA RAVH + NL LV H Y AL R +++N D+ H Sbjct: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211 Score = 27.7 bits (60), Expect = 2.0 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%) Query: 16 GDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 69 GDA R VHA+ NL LV H Y AL R +++N D+ H Sbjct: 162 GDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211 Score = 27.3 bits (59), Expect = 2.7 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Query: 59 LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYY 101 L GDA RAVH + NL LV H Y + VHV + Sbjct: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNR----VHVLW 198 >gi|45827701 pad-1-like [Homo sapiens] Length = 2298 Score = 27.7 bits (60), Expect = 2.0 Identities = 12/39 (30%), Positives = 23/39 (58%) Query: 15 VGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAV 53 VG+ + V+ A+Y+ DAL + + Y G++L+ A+ Sbjct: 381 VGNLFLEVIRAFYSYCRDALGSDLKLSYTQSGNSLISAI 419 Score = 27.3 bits (59), Expect = 2.7 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 44 LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHV 99 +VG+ + + +Y+ DAL + + Y G++L+ A+ N E+V+ V++ Sbjct: 380 VVGNLFLEVIRAFYSYCRDALGSDLKLSYTQSGNSLISAIKENRN-ASEIVKTVNL 434 >gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Homo sapiens] Length = 307 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 29 LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVR 66 LV D LV+ VH Y L GD L AVH+ + + VR Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHLLDSYLSAGRVR 146 Score = 26.6 bits (57), Expect = 4.5 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Query: 44 LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVR 81 LV D LV+ VH Y L GD L AVH+ + + VR Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHLLDSYLSAGRVR 146 Score = 25.8 bits (55), Expect = 7.7 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%) Query: 59 LVGDALVRAVHVYYNLVGDALVRAVHV 85 LV D LV+ VH Y L GD L AVH+ Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHL 135 >gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] Length = 5120 Score = 26.6 bits (57), Expect = 4.5 Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Query: 38 VHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNL--VGELVR 95 + VY+N + L + +Y +++G R + + + G+ + +H + L +G++ Sbjct: 421 ITVYFNPLEAKLYQQT-IYCDILG----REIRLPLRIKGEGMGPKIHFNFELLDIGKVFT 475 Query: 96 -AVHVYYNLVGEQGAVDPLFQM 116 + H Y ++ +G++D LF M Sbjct: 476 GSAHCYEAILYNKGSIDALFNM 497 >gi|46361983 hydrocephalus inducing isoform b [Homo sapiens] Length = 1017 Score = 26.6 bits (57), Expect = 4.5 Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Query: 38 VHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNL--VGELVR 95 + VY+N + L + +Y +++G R + + + G+ + +H + L +G++ Sbjct: 421 ITVYFNPLEAKLYQQT-IYCDILG----REIRLPLRIKGEGMGPKIHFNFELLDIGKVFT 475 Query: 96 -AVHVYYNLVGEQGAVDPLFQM 116 + H Y ++ +G++D LF M Sbjct: 476 GSAHCYEAILYNKGSIDALFNM 497 >gi|157364974 sucrase-isomaltase [Homo sapiens] Length = 1827 Score = 26.2 bits (56), Expect = 5.9 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Query: 41 YYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVR 95 +Y L+GD + V Y LVG + A+ Y+NL G L R + ++V E+VR Sbjct: 323 FYILLGDTPEQVVQQYQQLVG---LPAMPAYWNL-GFQLSRWNYKSLDVVKEVVR 373 >gi|21361743 nipsnap homolog 3B [Homo sapiens] Length = 247 Score = 25.8 bits (55), Expect = 7.7 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%) Query: 59 LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYY 101 L GDA RA++ + NL + V V++ GEL R VHV + Sbjct: 160 LWGDAFERAINAHVNL---GYTKVVGVFHTEYGELNR-VHVLW 198 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.328 0.144 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,768,385 Number of Sequences: 37866 Number of extensions: 126531 Number of successful extensions: 309 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 252 Number of HSP's gapped (non-prelim): 21 length of query: 116 length of database: 18,247,518 effective HSP length: 86 effective length of query: 30 effective length of database: 14,991,042 effective search space: 449731260 effective search space used: 449731260 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.