Search of human proteins with 239750930

Search of human proteins with 239750930

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239750930 PREDICTED: hypothetical protein [Homo sapiens]
         (116 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750930 PREDICTED: hypothetical protein [Homo sapiens]           236   3e-63
gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo ...   222   4e-59
gi|22267436 nipsnap homolog 3A [Homo sapiens]                          28   1.6  
gi|45827701 pad-1-like [Homo sapiens]                                  28   2.0  
gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Ho...    27   4.5  
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]           27   4.5  
gi|46361983 hydrocephalus inducing isoform b [Homo sapiens]            27   4.5  
gi|157364974 sucrase-isomaltase [Homo sapiens]                         26   5.9  
gi|21361743 nipsnap homolog 3B [Homo sapiens]                          26   7.7  

>gi|239750930 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 116

 Score =  236 bits (602), Expect = 3e-63
 Identities = 116/116 (100%), Positives = 116/116 (100%)

Query: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60
           MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV
Sbjct: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60

Query: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYYNLVGEQGAVDPLFQM 116
           GDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYYNLVGEQGAVDPLFQM
Sbjct: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYYNLVGEQGAVDPLFQM 116


>gi|239756403 PREDICTED: hypothetical protein XP_002344915 [Homo
           sapiens]
          Length = 118

 Score =  222 bits (566), Expect = 4e-59
 Identities = 113/118 (95%), Positives = 115/118 (97%), Gaps = 2/118 (1%)

Query: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60
           MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV
Sbjct: 1   MDAPVRVVHVYYNPVGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLV 60

Query: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGE-LVRAVHVYYNLVGEQ-GAVDPLFQM 116
           GDALVRAVHVYYNLVGDALVRAVHVYYNLVG+ LVRAVHVYYNLVG+  GAVDPLFQM
Sbjct: 61  GDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALGAVDPLFQM 118


>gi|22267436 nipsnap homolog 3A [Homo sapiens]
          Length = 247

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 4/56 (7%)

Query: 29  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 84
           L GDA  RAVH + NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 16  GDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVH 69
           GDA  R VHA+ NL    LV   H  Y     AL R   +++N   D+     H
Sbjct: 162 GDAFKRAVHAHVNLGYTKLVGVFHTEYG----ALNRVHVLWWNESADSRAAGRH 211



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 59  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYY 101
           L GDA  RAVH + NL    LV   H  Y  +      VHV +
Sbjct: 160 LWGDAFKRAVHAHVNLGYTKLVGVFHTEYGALNR----VHVLW 198


>gi|45827701 pad-1-like [Homo sapiens]
          Length = 2298

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 15  VGDALVRVVHAYYNLVGDALVRAVHVYYNLVGDALVRAV 53
           VG+  + V+ A+Y+   DAL   + + Y   G++L+ A+
Sbjct: 381 VGNLFLEVIRAFYSYCRDALGSDLKLSYTQSGNSLISAI 419



 Score = 27.3 bits (59), Expect = 2.7
 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 44  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHV 99
           +VG+  +  +  +Y+   DAL   + + Y   G++L+ A+    N   E+V+ V++
Sbjct: 380 VVGNLFLEVIRAFYSYCRDALGSDLKLSYTQSGNSLISAIKENRN-ASEIVKTVNL 434


>gi|242247025 cyclin N-terminal domain containing 2 isoform 2 [Homo
           sapiens]
          Length = 307

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 29  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVR 66
           LV D LV+ VH Y  L GD L  AVH+  + +    VR
Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHLLDSYLSAGRVR 146



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 44  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVR 81
           LV D LV+ VH Y  L GD L  AVH+  + +    VR
Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHLLDSYLSAGRVR 146



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 59  LVGDALVRAVHVYYNLVGDALVRAVHV 85
           LV D LV+ VH Y  L GD L  AVH+
Sbjct: 110 LVVDWLVQ-VHEYLGLAGDTLYLAVHL 135


>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
          Length = 5120

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 38  VHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNL--VGELVR 95
           + VY+N +   L +   +Y +++G    R + +   + G+ +   +H  + L  +G++  
Sbjct: 421 ITVYFNPLEAKLYQQT-IYCDILG----REIRLPLRIKGEGMGPKIHFNFELLDIGKVFT 475

Query: 96  -AVHVYYNLVGEQGAVDPLFQM 116
            + H Y  ++  +G++D LF M
Sbjct: 476 GSAHCYEAILYNKGSIDALFNM 497


>gi|46361983 hydrocephalus inducing isoform b [Homo sapiens]
          Length = 1017

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 18/82 (21%), Positives = 42/82 (51%), Gaps = 8/82 (9%)

Query: 38  VHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNL--VGELVR 95
           + VY+N +   L +   +Y +++G    R + +   + G+ +   +H  + L  +G++  
Sbjct: 421 ITVYFNPLEAKLYQQT-IYCDILG----REIRLPLRIKGEGMGPKIHFNFELLDIGKVFT 475

Query: 96  -AVHVYYNLVGEQGAVDPLFQM 116
            + H Y  ++  +G++D LF M
Sbjct: 476 GSAHCYEAILYNKGSIDALFNM 497


>gi|157364974 sucrase-isomaltase [Homo sapiens]
          Length = 1827

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 41  YYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVR 95
           +Y L+GD   + V  Y  LVG   + A+  Y+NL G  L R  +   ++V E+VR
Sbjct: 323 FYILLGDTPEQVVQQYQQLVG---LPAMPAYWNL-GFQLSRWNYKSLDVVKEVVR 373


>gi|21361743 nipsnap homolog 3B [Homo sapiens]
          Length = 247

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 59  LVGDALVRAVHVYYNLVGDALVRAVHVYYNLVGELVRAVHVYY 101
           L GDA  RA++ + NL      + V V++   GEL R VHV +
Sbjct: 160 LWGDAFERAINAHVNL---GYTKVVGVFHTEYGELNR-VHVLW 198


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.144    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,768,385
Number of Sequences: 37866
Number of extensions: 126531
Number of successful extensions: 309
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 21
length of query: 116
length of database: 18,247,518
effective HSP length: 86
effective length of query: 30
effective length of database: 14,991,042
effective search space: 449731260
effective search space used: 449731260
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.