Search of human proteins with 239748531

Search of human proteins with 239748531

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748531 PREDICTED: similar to hCG1820960 [Homo sapiens]
         (86 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748531 PREDICTED: similar to hCG1820960 [Homo sapiens]          184   1e-47
gi|4504223 glucuronidase, beta [Homo sapiens]                          97   4e-21
gi|239742568 PREDICTED: hypothetical protein XP_002342577 [Homo ...    94   3e-20
gi|239742564 PREDICTED: hypothetical protein XP_002342575 [Homo ...    93   5e-20
gi|32401447 solute carrier family 46, member 3 isoform a [Homo s...    30   0.53 
gi|209571533 solute carrier family 46, member 3 isoform b [Homo ...    30   0.53 
gi|4507751 thymidylate synthase [Homo sapiens]                         27   2.7  

>gi|239748531 PREDICTED: similar to hCG1820960 [Homo sapiens]
          Length = 86

 Score =  184 bits (468), Expect = 1e-47
 Identities = 86/86 (100%), Positives = 86/86 (100%)

Query: 1  MVCGYAPLFILFEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQS 60
          MVCGYAPLFILFEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQS
Sbjct: 1  MVCGYAPLFILFEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQS 60

Query: 61 KDEGNTGPHYGFTFGIHSSFQRRVKG 86
          KDEGNTGPHYGFTFGIHSSFQRRVKG
Sbjct: 61 KDEGNTGPHYGFTFGIHSSFQRRVKG 86


>gi|4504223 glucuronidase, beta [Homo sapiens]
          Length = 651

 Score = 96.7 bits (239), Expect = 4e-21
 Identities = 44/49 (89%), Positives = 47/49 (95%)

Query: 12  FEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQS 60
           F +DPPLMF+EEYQKSLLEQYHLGL+QKRRKYVVGELIWNFADFMT QS
Sbjct: 549 FHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQS 597


>gi|239742568 PREDICTED: hypothetical protein XP_002342577 [Homo
          sapiens]
          Length = 99

 Score = 93.6 bits (231), Expect = 3e-20
 Identities = 44/61 (72%), Positives = 49/61 (80%)

Query: 1  MVCGYAPLFILFEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQS 60
          M+  ++        DPPLMFSEE +KSLLEQYHLGL+QKRRKYVVGELIWNFADFMTNQ 
Sbjct: 2  MISNFSLAVFTLASDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQC 61

Query: 61 K 61
          K
Sbjct: 62 K 62


>gi|239742564 PREDICTED: hypothetical protein XP_002342575 [Homo
           sapiens]
          Length = 142

 Score = 92.8 bits (229), Expect = 5e-20
 Identities = 44/51 (86%), Positives = 47/51 (92%)

Query: 11  LFEKDPPLMFSEEYQKSLLEQYHLGLNQKRRKYVVGELIWNFADFMTNQSK 61
           L  +DPPLMFSEE +KSLLEQYHLGL+QKRRKYVVGELIWNFADFMTNQ K
Sbjct: 55  LESQDPPLMFSEEDRKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTNQCK 105


>gi|32401447 solute carrier family 46, member 3 isoform a [Homo
           sapiens]
          Length = 461

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 1   MVCGYAPLFILFEKDPPLMFSEEY 24
           +V G AP+FIL+E D PL ++E +
Sbjct: 273 VVIGIAPIFILYELDSPLCWNEVF 296


>gi|209571533 solute carrier family 46, member 3 isoform b [Homo
           sapiens]
          Length = 463

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 12/24 (50%), Positives = 18/24 (75%)

Query: 1   MVCGYAPLFILFEKDPPLMFSEEY 24
           +V G AP+FIL+E D PL ++E +
Sbjct: 273 VVIGIAPIFILYELDSPLCWNEVF 296


>gi|4507751 thymidylate synthase [Homo sapiens]
          Length = 313

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 9/80 (11%)

Query: 2   VCGYAPLFILFEKDPPLMFSEEYQKSLLEQ---YHLGLNQKRRKYVVGELIWN------F 52
           V G    + L ++ P L     + K +LE+   +  G    +     G  IW+      F
Sbjct: 58  VFGMQARYSLRDEFPLLTTKRVFWKGVLEELLWFIKGSTNAKELSSKGVKIWDANGSRDF 117

Query: 53  ADFMTNQSKDEGNTGPHYGF 72
            D +   +++EG+ GP YGF
Sbjct: 118 LDSLGFSTREEGDLGPVYGF 137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.141    0.443 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,665,088
Number of Sequences: 37866
Number of extensions: 134019
Number of successful extensions: 235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 7
length of query: 86
length of database: 18,247,518
effective HSP length: 58
effective length of query: 28
effective length of database: 16,051,290
effective search space: 449436120
effective search space used: 449436120
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.