Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239748466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748466 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
(202 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748466 PREDICTED: similar to zinc finger and BTB domain co... 407 e-114
gi|169164528 PREDICTED: similar to zinc finger and BTB domain co... 222 1e-58
gi|113414298 PREDICTED: similar to zinc finger and BTB domain co... 222 1e-58
gi|113413492 PREDICTED: similar to zinc finger and BTB domain co... 222 1e-58
gi|30425510 zinc finger and BTB domain containing 8 opposite str... 198 2e-51
gi|4559408 colony stimulating factor 2 receptor, beta precursor ... 29 3.1
gi|109809759 leucine rich repeat transmembrane neuronal 3 [Homo ... 29 3.1
gi|11225260 DNA topoisomerase I [Homo sapiens] 28 6.9
gi|34452688 regulator of G-protein signalling 11 isoform 1 [Homo... 28 6.9
gi|4506507 regulator of G-protein signalling 11 isoform 2 [Homo ... 28 6.9
gi|40548387 O-acyltransferase (membrane bound) domain containing... 27 9.0
>gi|239748466 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 202
Score = 407 bits (1046), Expect = e-114
Identities = 202/202 (100%), Positives = 202/202 (100%)
Query: 1 MKHVDPVAGSHKASMREARLEIVYTSGDRELKELQENGARSLPQSLYISVLLIRDIILLH 60
MKHVDPVAGSHKASMREARLEIVYTSGDRELKELQENGARSLPQSLYISVLLIRDIILLH
Sbjct: 1 MKHVDPVAGSHKASMREARLEIVYTSGDRELKELQENGARSLPQSLYISVLLIRDIILLH 60
Query: 61 NLSSKAVMAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAF 120
NLSSKAVMAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAF
Sbjct: 61 NLSSKAVMAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAF 120
Query: 121 EQCAMAIFGYMIDTRTVEPLQTIEVETQEVSTFLFHFLDEWLYKSNADEFFIPWEVKRRI 180
EQCAMAIFGYMIDTRTVEPLQTIEVETQEVSTFLFHFLDEWLYKSNADEFFIPWEVKRRI
Sbjct: 121 EQCAMAIFGYMIDTRTVEPLQTIEVETQEVSTFLFHFLDEWLYKSNADEFFIPWEVKRRI 180
Query: 181 FIVQSPSGNRSQSYNIFSNAGL 202
FIVQSPSGNRSQSYNIFSNAGL
Sbjct: 181 FIVQSPSGNRSQSYNIFSNAGL 202
>gi|169164528 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 136
Score = 222 bits (566), Expect = 1e-58
Identities = 111/137 (81%), Positives = 118/137 (86%), Gaps = 3/137 (2%)
Query: 68 MAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAFEQCAMAI 127
MAQ E DVRDYNLTEEQKAIKA YPPVNR YEYLDHTADVQLH WGDTLEEAFEQCAMA+
Sbjct: 1 MAQAEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 60
Query: 128 FGYMIDTRTVEPLQTIEVETQ--EVSTFLFHFLDEWLYKSNADEFFIPWEVKRRIFIVQS 185
FGYM DT TVEPL T+EVETQ ++ T LFHFLDEWLYK +ADEFFIP V RR+FIVQ+
Sbjct: 61 FGYMTDTGTVEPLPTVEVETQGNDLQTLLFHFLDEWLYKFSADEFFIP-RVGRRVFIVQA 119
Query: 186 PSGNRSQSYNIFSNAGL 202
SGNRSQ NIFSNAGL
Sbjct: 120 SSGNRSQGNNIFSNAGL 136
>gi|113414298 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 136
Score = 222 bits (566), Expect = 1e-58
Identities = 111/137 (81%), Positives = 118/137 (86%), Gaps = 3/137 (2%)
Query: 68 MAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAFEQCAMAI 127
MAQ E DVRDYNLTEEQKAIKA YPPVNR YEYLDHTADVQLH WGDTLEEAFEQCAMA+
Sbjct: 1 MAQAEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 60
Query: 128 FGYMIDTRTVEPLQTIEVETQ--EVSTFLFHFLDEWLYKSNADEFFIPWEVKRRIFIVQS 185
FGYM DT TVEPL T+EVETQ ++ T LFHFLDEWLYK +ADEFFIP V RR+FIVQ+
Sbjct: 61 FGYMTDTGTVEPLPTVEVETQGNDLQTLLFHFLDEWLYKFSADEFFIP-RVGRRVFIVQA 119
Query: 186 PSGNRSQSYNIFSNAGL 202
SGNRSQ NIFSNAGL
Sbjct: 120 SSGNRSQGNNIFSNAGL 136
>gi|113413492 PREDICTED: similar to zinc finger and BTB domain
containing 8 opposite strand [Homo sapiens]
Length = 136
Score = 222 bits (566), Expect = 1e-58
Identities = 111/137 (81%), Positives = 118/137 (86%), Gaps = 3/137 (2%)
Query: 68 MAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAFEQCAMAI 127
MAQ E DVRDYNLTEEQKAIKA YPPVNR YEYLDHTADVQLH WGDTLEEAFEQCAMA+
Sbjct: 1 MAQAEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFEQCAMAM 60
Query: 128 FGYMIDTRTVEPLQTIEVETQ--EVSTFLFHFLDEWLYKSNADEFFIPWEVKRRIFIVQS 185
FGYM DT TVEPL T+EVETQ ++ T LFHFLDEWLYK +ADEFFIP V RR+FIVQ+
Sbjct: 61 FGYMTDTGTVEPLPTVEVETQGNDLQTLLFHFLDEWLYKFSADEFFIP-RVGRRVFIVQA 119
Query: 186 PSGNRSQSYNIFSNAGL 202
SGNRSQ NIFSNAGL
Sbjct: 120 SSGNRSQGNNIFSNAGL 136
>gi|30425510 zinc finger and BTB domain containing 8 opposite strand
[Homo sapiens]
Length = 179
Score = 198 bits (504), Expect = 2e-51
Identities = 96/118 (81%), Positives = 105/118 (88%), Gaps = 2/118 (1%)
Query: 62 LSSKAVMAQKEGDVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAFE 121
+S+ AVMAQ+E DVRDYNLTEEQKAIKA YPPVNR YEYLDHTADVQLH WGDTLEEAFE
Sbjct: 7 VSNPAVMAQEEEDVRDYNLTEEQKAIKAKYPPVNRKYEYLDHTADVQLHAWGDTLEEAFE 66
Query: 122 QCAMAIFGYMIDTRTVEPLQTIEVETQ--EVSTFLFHFLDEWLYKSNADEFFIPWEVK 177
QCAMA+FGYM DT TVEPLQT+EVETQ ++ + LFHFLDEWLYK +ADEFFIP EVK
Sbjct: 67 QCAMAMFGYMTDTGTVEPLQTVEVETQGDDLQSLLFHFLDEWLYKFSADEFFIPREVK 124
>gi|4559408 colony stimulating factor 2 receptor, beta precursor
[Homo sapiens]
Length = 897
Score = 28.9 bits (63), Expect = 3.1
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 79 NLTEEQKAIKANYPPVNRNYEYLDHTADVQLH----TWGDTLEEAFE 121
N+T++ + + + YE++DHT ++Q TW D+ E +
Sbjct: 346 NVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQ 392
>gi|109809759 leucine rich repeat transmembrane neuronal 3 [Homo
sapiens]
Length = 581
Score = 28.9 bits (63), Expect = 3.1
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 14/167 (8%)
Query: 14 SMREARLEIVYTSGDRELKELQENGARSLPQSLYISVLLIRDIILLHNLSSKAVMAQKEG 73
S+R + I + EL +L N RSL ++++ ++ ++++ L HN SK +A
Sbjct: 168 SLRTIPVRIFQDCRNLELLDLGYNRIRSLARNVFAGMIRLKELHLEHNQFSKLNLALFPR 227
Query: 74 DVRDYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAFEQCAMAIFGYMID 133
V NL + I ++ + L +L G+ + EAF ++F
Sbjct: 228 LVSLQNLYLQWNKISVIGQTMSWTWSSLQ-----RLDLSGNEI-EAFS--GPSVF----- 274
Query: 134 TRTVEPLQTIEVETQEVSTFLFHFLDEWLYKSNADEFFIPWEVKRRI 180
+ V LQ + +++ +++ LD W+ ++ WE R I
Sbjct: 275 -QCVPNLQRLNLDSNKLTFIGQEILDSWISLNDISLAGNIWECSRNI 320
>gi|11225260 DNA topoisomerase I [Homo sapiens]
Length = 765
Score = 27.7 bits (60), Expect = 6.9
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Query: 2 KHVDPVAGSHKASMREA-----RLEIVYTSGDRELKELQENGARSLPQ 44
KH D + HK ++ + E V SGD ++K+ +ENG S PQ
Sbjct: 68 KHKDGSSEKHKDKHKDRDKEKRKEEKVRASGDAKIKKEKENGFSSPPQ 115
>gi|34452688 regulator of G-protein signalling 11 isoform 1 [Homo
sapiens]
Length = 467
Score = 27.7 bits (60), Expect = 6.9
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 99 EYLDHTADVQLHTWGDTLEEAFEQCAMAIFGYMIDTRTVEPLQTIE---------VETQE 149
E L + A Q+ T D + E F A + ID+RT+E QT+E ++ +
Sbjct: 337 EELRYGAQAQVPTLVDAVYEQFLAPGAAHW-VNIDSRTME--QTLEGLRQPHRYVLDDAQ 393
Query: 150 VSTFLF-------HFLDEWLYKSNADEFFIPWEVKRRIF 181
+ ++ FL +YK+ E IP E+KRR+F
Sbjct: 394 LHIYMLMKKDSYPRFLKSDMYKALLAEAGIPLEMKRRVF 432
>gi|4506507 regulator of G-protein signalling 11 isoform 2 [Homo
sapiens]
Length = 446
Score = 27.7 bits (60), Expect = 6.9
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 99 EYLDHTADVQLHTWGDTLEEAFEQCAMAIFGYMIDTRTVEPLQTIE---------VETQE 149
E L + A Q+ T D + E F A + ID+RT+E QT+E ++ +
Sbjct: 316 EELRYGAQAQVPTLVDAVYEQFLAPGAAHW-VNIDSRTME--QTLEGLRQPHRYVLDDAQ 372
Query: 150 VSTFLF-------HFLDEWLYKSNADEFFIPWEVKRRIF 181
+ ++ FL +YK+ E IP E+KRR+F
Sbjct: 373 LHIYMLMKKDSYPRFLKSDMYKALLAEAGIPLEMKRRVF 411
>gi|40548387 O-acyltransferase (membrane bound) domain containing 2
[Homo sapiens]
Length = 520
Score = 27.3 bits (59), Expect = 9.0
Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 10/147 (6%)
Query: 17 EARLEIVYTSGDRELKELQENGARSLPQSLYISVLLIRDIILLHNLSSKAVMAQKEGDVR 76
E R + SG+ +E Q P + + LL+ + LL +L+ +
Sbjct: 203 EGRSYHITQSGENGKEETQYERTEPSPNTAVVQKLLVCGLSLLFHLTICTTLPV------ 256
Query: 77 DYNLTEEQKAIKANYPPVNRNYEYLDHTADVQLHTWGDTLEEAFEQCA-MAIFGYMID-T 134
+YN+ E +A + P Y Y+ A + + TL +A A GY +
Sbjct: 257 EYNIDEHFQATAS--WPTKIIYLYISLLAARPKYYFAWTLADAINNAAGFGFRGYDENGA 314
Query: 135 RTVEPLQTIEVETQEVSTFLFHFLDEW 161
+ + + ++ E+ST FLD W
Sbjct: 315 ARWDLISNLRIQQIEMSTSFKMFLDNW 341
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.133 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,107,493
Number of Sequences: 37866
Number of extensions: 270680
Number of successful extensions: 653
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 11
length of query: 202
length of database: 18,247,518
effective HSP length: 97
effective length of query: 105
effective length of database: 14,574,516
effective search space: 1530324180
effective search space used: 1530324180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.