Search of human proteins with 239748264

Search of human proteins with 239748264

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748264 PREDICTED: hypothetical protein XP_002346624 [Homo
sapiens]
         (148 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753712 PREDICTED: hypothetical protein [Homo sapiens]           304   2e-83
gi|239748264 PREDICTED: hypothetical protein XP_002346624 [Homo ...   304   2e-83
gi|239742165 PREDICTED: hypothetical protein XP_002342418 [Homo ...   304   2e-83
gi|49574216 protein kinase NYD-SP25 isoform 3 [Homo sapiens]           28   2.1  
gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]    27   4.8  
gi|17998551 serine (or cysteine) proteinase inhibitor, clade B (...    27   6.2  

>gi|239753712 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 148

 Score =  304 bits (778), Expect = 2e-83
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN 60
           MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN
Sbjct: 1   MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN 60

Query: 61  EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS 120
           EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS
Sbjct: 61  EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS 120

Query: 121 CTLPIAHGGLLGFLPLLFVFSSVIPQIR 148
           CTLPIAHGGLLGFLPLLFVFSSVIPQIR
Sbjct: 121 CTLPIAHGGLLGFLPLLFVFSSVIPQIR 148


>gi|239748264 PREDICTED: hypothetical protein XP_002346624 [Homo
           sapiens]
          Length = 148

 Score =  304 bits (778), Expect = 2e-83
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN 60
           MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN
Sbjct: 1   MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN 60

Query: 61  EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS 120
           EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS
Sbjct: 61  EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS 120

Query: 121 CTLPIAHGGLLGFLPLLFVFSSVIPQIR 148
           CTLPIAHGGLLGFLPLLFVFSSVIPQIR
Sbjct: 121 CTLPIAHGGLLGFLPLLFVFSSVIPQIR 148


>gi|239742165 PREDICTED: hypothetical protein XP_002342418 [Homo
           sapiens]
          Length = 148

 Score =  304 bits (778), Expect = 2e-83
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN 60
           MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN
Sbjct: 1   MNSIPPRAKRIENRDTFHSTMCLGSVHSDHVEVSRRTYRTSFATVFMATAATAVILFQPN 60

Query: 61  EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS 120
           EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS
Sbjct: 61  EDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGEPHQRMSDAS 120

Query: 121 CTLPIAHGGLLGFLPLLFVFSSVIPQIR 148
           CTLPIAHGGLLGFLPLLFVFSSVIPQIR
Sbjct: 121 CTLPIAHGGLLGFLPLLFVFSSVIPQIR 148


>gi|49574216 protein kinase NYD-SP25 isoform 3 [Homo sapiens]
          Length = 132

 Score = 28.5 bits (62), Expect = 2.1
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 52  TAVILFQPNEDKCWQEHLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGE 111
           TA++  + N  K W +   + +Y  +K    AA    G ++C  +G VK++ +  + EG 
Sbjct: 67  TALVGLRQNLSKSWLDVQVSNTYVKQKT--SAALSTMGTLICRKLGGVKKSATLRSFEGN 124

Query: 112 P 112
           P
Sbjct: 125 P 125


>gi|126131099 guanine nucleotide exchange factor p532 [Homo sapiens]
          Length = 4861

 Score = 27.3 bits (59), Expect = 4.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 97   GKVKQNISRDAQEGEPHQRMSDASCTLPIA 126
            GK+KQ I + A+E +P Q+      T P A
Sbjct: 2611 GKIKQEIDQQAEESDPAQQAQTPVTTSPSA 2640


>gi|17998551 serine (or cysteine) proteinase inhibitor, clade B
           (ovalbumin), member 12 [Homo sapiens]
          Length = 405

 Score = 26.9 bits (58), Expect = 6.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 68  HLQATSYDARKEPHEAAEVVFGGILCFPIGKVKQNISRDAQEGE 111
           H    S D +K P ++ + +   + C   GK+K+  S+DA   E
Sbjct: 139 HTTIESVDFQKNPEKSRQEINFWVECQSQGKIKELFSKDAINAE 182


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,479,987
Number of Sequences: 37866
Number of extensions: 198008
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 6
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.