Search of human proteins with 239747954

Search of human proteins with 239747954

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747954 PREDICTED: hypothetical protein XP_002346502 [Homo
sapiens]
         (80 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753385 PREDICTED: hypothetical protein XP_002345632 [Homo ...   174   1e-44
gi|239747954 PREDICTED: hypothetical protein XP_002346502 [Homo ...   174   1e-44
gi|239741849 PREDICTED: hypothetical protein XP_002342341 [Homo ...   174   1e-44
gi|119395729 cathepsin A isoform a precursor [Homo sapiens]            29   0.71 
gi|189163485 cathepsin A isoform b precursor [Homo sapiens]            29   0.71 
gi|4507047 solute carrier family 7 (cationic amino acid transpor...    26   6.0  
gi|239753186 PREDICTED: hypothetical protein [Homo sapiens]            26   7.8  
gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo ...    26   7.8  
gi|239741626 PREDICTED: hypothetical protein XP_002342265 [Homo ...    26   7.8  

>gi|239753385 PREDICTED: hypothetical protein XP_002345632 [Homo
          sapiens]
          Length = 80

 Score =  174 bits (441), Expect = 1e-44
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI 60
          MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI
Sbjct: 1  MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI 60

Query: 61 FLYFLYHLPNSWHLVADTLA 80
          FLYFLYHLPNSWHLVADTLA
Sbjct: 61 FLYFLYHLPNSWHLVADTLA 80


>gi|239747954 PREDICTED: hypothetical protein XP_002346502 [Homo
          sapiens]
          Length = 80

 Score =  174 bits (441), Expect = 1e-44
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI 60
          MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI
Sbjct: 1  MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI 60

Query: 61 FLYFLYHLPNSWHLVADTLA 80
          FLYFLYHLPNSWHLVADTLA
Sbjct: 61 FLYFLYHLPNSWHLVADTLA 80


>gi|239741849 PREDICTED: hypothetical protein XP_002342341 [Homo
          sapiens]
          Length = 80

 Score =  174 bits (441), Expect = 1e-44
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1  MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI 60
          MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI
Sbjct: 1  MRALGFGLEYCGEFGCEETVRWFSPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLI 60

Query: 61 FLYFLYHLPNSWHLVADTLA 80
          FLYFLYHLPNSWHLVADTLA
Sbjct: 61 FLYFLYHLPNSWHLVADTLA 80


>gi|119395729 cathepsin A isoform a precursor [Homo sapiens]
          Length = 498

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 22  WF--SPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLIFLYFLYHLPNSWHLVADTL 79
           WF  S   P  S +V  L+ GP  +SL G L    P L       L + P SW+L+A+ L
Sbjct: 83  WFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVL 142


>gi|189163485 cathepsin A isoform b precursor [Homo sapiens]
          Length = 480

 Score = 29.3 bits (64), Expect = 0.71
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 22  WF--SPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLIFLYFLYHLPNSWHLVADTL 79
           WF  S   P  S +V  L+ GP  +SL G L    P L       L + P SW+L+A+ L
Sbjct: 65  WFVESQKDPENSPVVLWLNGGPGCSSLDGLLTEHGPFLVQPDGVTLEYNPYSWNLIANVL 124


>gi|4507047 solute carrier family 7 (cationic amino acid
           transporter, y+ system), member 1 [Homo sapiens]
          Length = 629

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 29  AGSYLVNALDAG-----PEHNSLKGFLVPLFPLLPLIFLYFLYHL 68
           AGS L+ A+  G     PE  +   F VP  P+LP++ ++   +L
Sbjct: 533 AGSALLCAVVTGVIWRQPESKTKLSFKVPFLPVLPILSIFVNVYL 577


>gi|239753186 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 110

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 24 SPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLIF 61
          S G+P+G  L + L A P    + G ++PL   L  +F
Sbjct: 47 SSGLPSGHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVF 84


>gi|239747760 PREDICTED: hypothetical protein XP_002348241 [Homo
          sapiens]
          Length = 110

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 24 SPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLIF 61
          S G+P+G  L + L A P    + G ++PL   L  +F
Sbjct: 47 SSGLPSGHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVF 84


>gi|239741626 PREDICTED: hypothetical protein XP_002342265 [Homo
          sapiens]
          Length = 110

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 24 SPGMPAGSYLVNALDAGPEHNSLKGFLVPLFPLLPLIF 61
          S G+P+G  L + L A P    + G ++PL   L  +F
Sbjct: 47 SSGLPSGHTLAHGLLAHPLIGGVTGHVIPLLLNLDTVF 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.327    0.147    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,620,751
Number of Sequences: 37866
Number of extensions: 144928
Number of successful extensions: 352
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 9
length of query: 80
length of database: 18,247,518
effective HSP length: 52
effective length of query: 28
effective length of database: 16,278,486
effective search space: 455797608
effective search space used: 455797608
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.