Search of human proteins with 239747625

Search of human proteins with 239747625

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747625 PREDICTED: hypothetical protein LOC644006 [Homo
sapiens]
         (74 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747625 PREDICTED: hypothetical protein LOC644006 [Homo sap...   159   5e-40
gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]            27   4.7  
gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]            27   4.7  
gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo ...    27   4.7  
gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]      26   7.9  
gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]      26   7.9  
gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]      26   7.9  
gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]      26   7.9  

>gi|239747625 PREDICTED: hypothetical protein LOC644006 [Homo
          sapiens]
          Length = 74

 Score =  159 bits (402), Expect = 5e-40
 Identities = 74/74 (100%), Positives = 74/74 (100%)

Query: 1  MWEPQVRSGAAKWPKLPLTAQGLAVANERGLTVPACLLFRCPPSSEGFKQNKQPFHVKHL 60
          MWEPQVRSGAAKWPKLPLTAQGLAVANERGLTVPACLLFRCPPSSEGFKQNKQPFHVKHL
Sbjct: 1  MWEPQVRSGAAKWPKLPLTAQGLAVANERGLTVPACLLFRCPPSSEGFKQNKQPFHVKHL 60

Query: 61 QGGKGATSGFVSNN 74
          QGGKGATSGFVSNN
Sbjct: 61 QGGKGATSGFVSNN 74


>gi|239757333 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 5  QVRSGAAKWPKLPLTAQGLAVANERGLTVPACLLFRC-PPSSEGF 48
          + R  A +W   P    G A A ER       L  RC PP +EGF
Sbjct: 33 ETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGF 77


>gi|239751837 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 303

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 5  QVRSGAAKWPKLPLTAQGLAVANERGLTVPACLLFRC-PPSSEGF 48
          + R  A +W   P    G A A ER       L  RC PP +EGF
Sbjct: 33 ETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGF 77


>gi|239746328 PREDICTED: hypothetical protein XP_002343731 [Homo
          sapiens]
          Length = 303

 Score = 26.6 bits (57), Expect = 4.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 5  QVRSGAAKWPKLPLTAQGLAVANERGLTVPACLLFRC-PPSSEGF 48
          + R  A +W   P    G A A ER       L  RC PP +EGF
Sbjct: 33 ETRQAARRWASGPSGGGGDAGATERRRDTRCGLRPRCRPPMTEGF 77


>gi|15619008 vacuolar protein sorting 13A isoform B [Homo sapiens]
          Length = 3095

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 51   NKQP--FHVKHLQGGKGATSGFVS 72
            NKQP  F     +GGKG  SGFVS
Sbjct: 2950 NKQPAGFREGITRGGKGLVSGFVS 2973


>gi|66346676 vacuolar protein sorting 13A isoform D [Homo sapiens]
          Length = 3069

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 51   NKQP--FHVKHLQGGKGATSGFVS 72
            NKQP  F     +GGKG  SGFVS
Sbjct: 2950 NKQPAGFREGITRGGKGLVSGFVS 2973


>gi|66346674 vacuolar protein sorting 13A isoform A [Homo sapiens]
          Length = 3174

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 51   NKQP--FHVKHLQGGKGATSGFVS 72
            NKQP  F     +GGKG  SGFVS
Sbjct: 2950 NKQPAGFREGITRGGKGLVSGFVS 2973


>gi|66346672 vacuolar protein sorting 13A isoform C [Homo sapiens]
          Length = 3135

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 51   NKQP--FHVKHLQGGKGATSGFVS 72
            NKQP  F     +GGKG  SGFVS
Sbjct: 2911 NKQPAGFREGITRGGKGLVSGFVS 2934


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,245,812
Number of Sequences: 37866
Number of extensions: 124023
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 8
length of query: 74
length of database: 18,247,518
effective HSP length: 46
effective length of query: 28
effective length of database: 16,505,682
effective search space: 462159096
effective search space used: 462159096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.