Search of human proteins with 116875844

Search of human proteins with 116875844

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|116875844 phosphopantothenoylcysteine synthetase isoform a
[Homo sapiens]
         (311 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|116875844 phosphopantothenoylcysteine synthetase isoform a [H...   606   e-174
gi|116875846 phosphopantothenoylcysteine synthetase isoform b [H...   269   3e-72
gi|217416392 pleckstrin homology domain containing, family H (wi...    29   6.1  
gi|41282031 progestin and adipoQ receptor family member VI isofo...    29   6.1  
gi|24432011 progestin and adipoQ receptor family member VI isofo...    29   6.1  
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu...    28   8.0  
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec...    28   8.0  
gi|94538354 mitochondrial processing peptidase beta subunit prec...    28   8.0  

>gi|116875844 phosphopantothenoylcysteine synthetase isoform a [Homo
           sapiens]
          Length = 311

 Score =  606 bits (1562), Expect = e-174
 Identities = 311/311 (100%), Positives = 311/311 (100%)

Query: 1   MAEMDPVAEFPQPPGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNF 60
           MAEMDPVAEFPQPPGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNF
Sbjct: 1   MAEMDPVAEFPQPPGAARWAEVMARFAARLGAQGRRVVLVTSGGTKVPLEARPVRFLDNF 60

Query: 61  SSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEA 120
           SSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEA
Sbjct: 61  SSGRRGATSAEAFLAAGYGVLFLYRARSAFPYAHRFPPQTWLSALRPSGPALSGLLSLEA 120

Query: 121 EENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAA 180
           EENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAA
Sbjct: 121 EENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAA 180

Query: 181 VSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVI 240
           VSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVI
Sbjct: 181 VSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLETDPAIVI 240

Query: 241 NRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQ 300
           NRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQ
Sbjct: 241 NRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEEKIVDNLQ 300

Query: 301 SRHTAFIGDRN 311
           SRHTAFIGDRN
Sbjct: 301 SRHTAFIGDRN 311


>gi|116875846 phosphopantothenoylcysteine synthetase isoform b [Homo
           sapiens]
          Length = 138

 Score =  269 bits (687), Expect = 3e-72
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 174 MFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLE 233
           MFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLE
Sbjct: 1   MFYLAAAVSDFYVPVSEMPEHKIQSSGGPLQITMKMVPKLLSPLVKDWAPKAFIISFKLE 60

Query: 234 TDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEE 293
           TDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEE
Sbjct: 61  TDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIEKGVEIEE 120

Query: 294 KIVDNLQSRHTAFIGDRN 311
           KIVDNLQSRHTAFIGDRN
Sbjct: 121 KIVDNLQSRHTAFIGDRN 138


>gi|217416392 pleckstrin homology domain containing, family H (with
           MyTH4 domain) member 2 [Homo sapiens]
          Length = 1493

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 16/74 (21%), Positives = 40/74 (54%), Gaps = 4/74 (5%)

Query: 227 IISFKLETDPAIVINRARKALEIYQHQVVVANILESRQSFVFIVTKDSETKLLLSEEEIE 286
           +++ K++     VI+  R+A + +Q       ++E +     I T +SET+L    +++E
Sbjct: 37  LLAEKMQQLERQVIDAERQAEKAFQQ----VQVMEDKLKAANIQTSESETRLYNKCQDLE 92

Query: 287 KGVEIEEKIVDNLQ 300
             ++ ++ ++ NL+
Sbjct: 93  SLIQEKDDVIQNLE 106


>gi|41282031 progestin and adipoQ receptor family member VI isoform
           2 [Homo sapiens]
          Length = 344

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 78  YGVLFLYRARSAFPYAHRFPPQTWL 102
           YG L LY    AFPYA    P +WL
Sbjct: 120 YGALSLYSLGCAFPYAAYSMPASWL 144


>gi|24432011 progestin and adipoQ receptor family member VI isoform
           1 [Homo sapiens]
          Length = 351

 Score = 28.9 bits (63), Expect = 6.1
 Identities = 13/25 (52%), Positives = 14/25 (56%)

Query: 78  YGVLFLYRARSAFPYAHRFPPQTWL 102
           YG L LY    AFPYA    P +WL
Sbjct: 14  YGALSLYSLGCAFPYAAYSMPASWL 38


>gi|33598929 scavenger receptor class F, member 1 isoform 1
           precursor [Homo sapiens]
          Length = 830

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 85  RARSAFPYAHRFPPQTWLSALRPSGP----------ALSGLLSLEAEENALPGFAEALRS 134
           R   +F    +F PQ+  S+   S P          A SG    EAEE+  P  AEA  S
Sbjct: 587 RPSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGREAEESTGPEEAEAPES 646

Query: 135 YQEAAAAGTFLA------VEFTTLADYLHLLQAAAQALNPLGPSAMFYLAA 179
           +  AA+ G          +   T+A+++  ++ + Q  +  GP    Y+ A
Sbjct: 647 FPAAASPGDSATGHRRPPLGGRTVAEHVEAIEGSVQESS--GPVTTIYMLA 695


>gi|145309306 scavenger receptor class F, member 1 isoform 5
           precursor [Homo sapiens]
          Length = 744

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)

Query: 85  RARSAFPYAHRFPPQTWLSALRPSGP----------ALSGLLSLEAEENALPGFAEALRS 134
           R   +F    +F PQ+  S+   S P          A SG    EAEE+  P  AEA  S
Sbjct: 501 RPSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSRGAQSGPEGREAEESTGPEEAEAPES 560

Query: 135 YQEAAAAGTFLA------VEFTTLADYLHLLQAAAQALNPLGPSAMFYLAA 179
           +  AA+ G          +   T+A+++  ++ + Q  +  GP    Y+ A
Sbjct: 561 FPAAASPGDSATGHRRPPLGGRTVAEHVEAIEGSVQESS--GPVTTIYMLA 609


>gi|94538354 mitochondrial processing peptidase beta subunit
           precursor [Homo sapiens]
          Length = 489

 Score = 28.5 bits (62), Expect = 8.0
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 113 SGLLSLEAEENALPGFAEALRSYQEAAAAGTFLAVEFTTLADYLHLLQ 160
           S L  L    N    F     SY +    G ++  E +T+AD LH++Q
Sbjct: 335 SKLAQLTCHGNLCHSFQSFNTSYTDTGLWGLYMVCESSTVADMLHVVQ 382


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,411,198
Number of Sequences: 37866
Number of extensions: 473794
Number of successful extensions: 1410
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1405
Number of HSP's gapped (non-prelim): 8
length of query: 311
length of database: 18,247,518
effective HSP length: 102
effective length of query: 209
effective length of database: 14,385,186
effective search space: 3006503874
effective search space used: 3006503874
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.